Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1954 ATGTTTCTTCGCATGTCCAGAGATCTCTCAAATCAAACTATTCATTTGTATGTTGCTACTTTACGAGAACAATTAGAACAACTAAGTGAAGAGAGAACTCTAGAAGGCTTACCAAGGGTTTCAAAACAGAAGGTGAATGAGTATGCGGAGGAGATTGAAGCCATGGCGTCCAAAATAATTGCTCCATCGTCTGATGTGCAAGTATCCCAAGAGCCTCTTTCTGGTACTTATGGCCAGGAAGGCCATTCTAAAGAAGGAGAGGATTCCATCCCCCATTCCCCAGGATTGCGAAGGAGATTTGTGCCTGCTTCAAATGTTGAAGATAGAACTCATGATACTGTAAAGGCAGATACATTGGGGCCAGTCAAATTGGATGTTGCAGCACAGGCACATATTGAAAAGCACAGGAAGCTTCAAGAAGACCTGACAGATGAAATGGTCGGATTGGCAAAGCAACTCAAGCAAGGTAGTCTCTTGATGAGCCAGTCCATAGAGAACTCTGAAAAGATACTTGATTCTACAGAGAAAGCAGTTGAGCATAGCTTGGCAAGCACTGGCCGTGTCAATACACGGGCTATGGAGATAAACTCGAATGGTTTTAAGACCACGTGCTTCACATGGATTCTGATCTTTGTCATGATGTGTATCTTCATTATGGTTGTGCTTCTAATTCGCGTCACTTAA 684 0.4298 MFLRMSRDLSNQTIHLYVATLREQLEQLSEERTLEGLPRVSKQKVNEYAEEIEAMASKIIAPSSDVQVSQEPLSGTYGQEGHSKEGEDSIPHSPGLRRRFVPASNVEDRTHDTVKADTLGPVKLDVAAQAHIEKHRKLQEDLTDEMVGLAKQLKQGSLLMSQSIENSEKILDSTEKAVEHSLASTGRVNTRAMEINSNGFKTTCFTWILIFVMMCIFIMVVLLIRVT* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1954 227 CDD SNARE_USE1 135 191 - -
Vvi18g1954 227 PANTHER USE1-LIKE PROTEIN 12 227 IPR019150 -
Vvi18g1954 227 MobiDBLite consensus disorder prediction 63 109 - -
Vvi18g1954 227 MobiDBLite consensus disorder prediction 63 77 - -
Vvi18g1954 227 Pfam Membrane fusion protein Use1 14 227 IPR019150 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1954 Vvi-Chr18 27016436 27022051 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1954 K08507 - vvi:100260177 400.208