Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1953 ATGTGCTACTCTCACCTTGTCTACCAACTGCAGGCCTGTGCCAGACATCAATCCCCACCTATTGGCAAGAAACTCCATTGCCATATCATCAAAACTGGCATAGATCAATGCAAGTCCCTTTCCAACAATCTCATAAACATGTATGGCAAATGTGGCCTCATTCAAGATGCCCTTAACTTGTTCAACCAGCTGCCCCATAGAGACCCAATTTCATGGGCCTCAATTCTTACAGCCAACAACCAAGCTAACCTCCCCCACTTGACACTTTCCATGTTTCCTGCCATGTTCAAACAAGACGGTTTGCAGCCTGATCATTATGTCTTTGCTTGCCTTGTTAAGGCCTGTGCGATCTTGGGTGCAATGAAGCAAGGAAAGCAAGTGCATGCAACCTTTATTGTGTCACCAGTTTCTGATGATGATGTTGTAAAATCATCCCTTGTTGATATGTATGCAAAATGCGGCTTGCCTGATATTGGTCGTGTGGTTTTTGATTCAATTTCTTCAAAGAATTCAATTTCTTGGACTGCTATGATTTCAGGATATGCTCAAAGTGGCCGAAAATTGGATGCTATTCAGCTATTCCAGAAAATGCCAGTGAAGAATTTACTTTCTTGGACAGCATTGATATCTGGGCTGGTACAAAGTGGGAACTGGGTTGATTCGTTTTATTTATTTATGGAAATGCGAAGCAAAGGGATTGATATAGTAGACCCATTTATTCTTTCAAGCATCATTGGAGCTTCTGCTAATTTAGCAGTACTGGGACTTGGGAAGCAGATTCATTGCCTAGTTATACTTCTTGGTTATGAATCTAGCTTGTTTGTTAGTAATGCACTTGTGGATATGTATGCTAAATGTAGTGATGTTTTAGCTGCCAAAAAGATTTTTGGTCGAATGGTTCAAAGAGATATAGTTTCTTGGACTTCAATAATAGTTGGGACCGCTCAACATGGGCTAGCTGAGGAAGCATTGTCCTTGTATAATCGGATGCTTTCAACTGGACTAAAGCCTAATGAAGTGACATTTGTTGGATTAATTTATGCCTGTAGCCATGTAGGATTAGTTAGCAAAGGTCGATACTTTTTCAACTCCATGATTAAAGATTATGGAATCAATCCTTCCCTTCAGCATTACACATGCTTATTGGATCTTCTTAGTCGCTCAGGGCATCTTGAAGAGGCTGAGAATCTCATTAAGGCAATGCCATTCAAGCCTGATGAAGCTACCTGGGCTGCTTTGCTAAGTGCTTGTAATCACCACAGGAATACCCTTATAGGAATTAGGGTTGCTGATCATCTACTAAGCTTAAAACCTGAAGATCCTTCAACCTACATACTGCTATCTAATATTTATGCCAGTGCTGCTATGTGGGAAAGTGTATCAAAGGTGAGAAGATTGATGGCAGCTATGGAAGTTAAAAAAGAACCTGGTTATAGTTGCATTGTCTTGGGAAAGGAGAGTCAAGTGTTCTTGGCTGGGGAGACCTCTCATCCTGCGAAGGAGGAAATTTTTGGTTTGCTCGAAGAATTGGATGCAGAGATGAAGAAAAGAGGTTATATTCCTGATACAAGTTCTGTTTTACATGACTTGGAGCAGCAAGAGAAGGAAAGGCAGCTTTTTTGGCATAGTGAGAGGTTAGCTGTGGCTTATGGGCTGCTCAAGGGTATTCCTGGGATGGTTCTACATATAGTGAAAAATCTTCGGGTTTGTGGAGATTGTCATACTGTTTTAAAGTTCATTAGCATTATTGTGAAAAGGGAAATTGTTGTCCGAGATGCCAACAGATACCATCATTTTAAGGATGGGAAATGTTCATGTAACAACTTTTGGTGA 1833 0.4075 MCYSHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1953 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Vvi18g1953 610 Pfam PPR repeat 204 233 IPR002885 -
Vvi18g1953 610 Pfam PPR repeat 172 201 IPR002885 -
Vvi18g1953 610 Pfam PPR repeat 42 64 IPR002885 -
Vvi18g1953 610 Pfam PPR repeat 378 401 IPR002885 -
Vvi18g1953 610 Pfam PPR repeat family 303 350 IPR002885 -
Vvi18g1953 610 Gene3D Tetratricopeptide repeat domain 140 253 IPR011990 GO:0005515
Vvi18g1953 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Vvi18g1953 610 FunFam Uncharacterized protein 277 493 - -
Vvi18g1953 610 NCBIfam pentatricopeptide repeat 172 199 IPR002885 -
Vvi18g1953 610 NCBIfam pentatricopeptide repeat 204 233 IPR002885 -
Vvi18g1953 610 NCBIfam pentatricopeptide repeat 340 374 IPR002885 -
Vvi18g1953 610 NCBIfam pentatricopeptide repeat 305 339 IPR002885 -
Vvi18g1953 610 Gene3D Tetratricopeptide repeat domain 2 133 IPR011990 GO:0005515
Vvi18g1953 610 Gene3D Tetratricopeptide repeat domain 320 492 IPR011990 GO:0005515
Vvi18g1953 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 200 IPR002885 -
Vvi18g1953 610 Pfam E motif 423 481 IPR046848 -
Vvi18g1953 610 Pfam DYW family of nucleic acid deaminases 518 610 IPR032867 GO:0008270
Vvi18g1953 610 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 200 547 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1953 Vvi-Chr18 27010880 27012712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1953 10 610 Glycoside Hydrolase AT3G49170 37.767 5.39e-145 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1953 - - vvi:100249938 1219.91