Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1943 ATGGTTAAGGATAGCAACGGTTGCATCACTCGTCTTCTCTTTTGTGGGCCAAATTTTCCTGCTTCAAATAAATACACTAGAGAATATTTACAAAACTACCCATTTATCCAGGTGGATGATTCTTCCTTTGAAGATGTGCCTGATGTTATTGCTGACTATGATATGTGTATAGTAAAAAGCATGCGGCTAGATTCAAATATTATTTCTCGTGCAAATAAGATGAAGCTTATAATGCAGTTTGGTGTTGGGCTAGAAGGTGTTGACATCAATGCTGCTACAAAATGTGGAATTAAAGTCGCTAGAATCGCGAGTGGTGAAACTGGTAATGCTGCCTCATGTGCAGAAATGGCCATATATCTGATGCTGGGACTTCTCCGGAAGCAAAAAGAGATGCAGATTTCTTTAAAACAGAAAATAGTTGGAGAGCCTATTGGTGATACACTATTTGGAAAAACTGTATTCATTATGGGGTTTGGAAATATTGGGATTGATTTGGCAAAGCGCTTGCGACCATTTGGTGTAAGAATTCTTGCTACAAAACGGAGTTGGGCCTCTCAGTCTCTAAATTCTAGCCAATCAAATGGGTTTCCCACTCCAAATGATAATGCTGATGAATTGGTTGATGAGAAGGGTGGTCATGAAGCTATCTATGACTTTGCAAGCAGTGCTGACATAGTTGTTTGCTGCTTGAGATTGAATAGTGAAACAGCTGCCATAATAGACAAGAAATTCATATCTTCAATGAGGAAGGGTGGCCTTTTGATAAATATTGCCCGAGGGGGTCTCATGGACTATGAGGCTGTTGCTTATCACCTTGAATCTGGTCACTTGGGAGGCCTGGGGACTGATGTTACTTGGACTGAGCCATTTAATCCTGATGACCAAATTTTGAAGTTCCAGAATGTCATAGTCACACCACATGTTGCAGGGGTTACAGAACATTCTTATAGATCCATGGCCAAGGTTGTAGGTGATATTGCCCTCCAACTTCATGCTGGGGCTCCTCTGACAGGATTAGAGTTCGTCAACTGA 1032 0.4118 MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKSMRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATKRSWASQSLNSSQSNGFPTPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETAAIIDKKFISSMRKGGLLINIARGGLMDYEAVAYHLESGHLGGLGTDVTWTEPFNPDDQILKFQNVIVTPHVAGVTEHSYRSMAKVVGDIALQLHAGAPLTGLEFVN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1943 343 PANTHER FORMATE DEHYDROGENASE 1 40 330 - -
Vvi18g1943 343 Gene3D - 102 311 - -
Vvi18g1943 343 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 248 264 IPR029753 -
Vvi18g1943 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 112 310 IPR036291 -
Vvi18g1943 343 CDD 2-Hacid_dh_11 11 336 - -
Vvi18g1943 343 Gene3D - 35 323 - -
Vvi18g1943 343 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 38 135 - -
Vvi18g1943 343 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 23 330 IPR006139 GO:0016616|GO:0051287
Vvi18g1943 343 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 309 IPR006140 GO:0051287
Vvi18g1943 343 FunFam Phosphoglycerate dehydrogenase, putative; 33424-31403 102 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1943 Vvi-Chr18 26773546 26790489 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1943 - - vvi:100258500 676.011