Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1939 ATGGAATGCAGGAAGTTCGAGATCACCCTTGTTTCAGCTCGAAATCTTGAGGTACGAGAAACACACAAAATGAAGGTTTACGCAAAGATTTCAATTGCAGGCGATCCCAACATGGAGAAAAGAACCCCAGTGGACAAGAAAGGGCGGGCCAACCCAGCATGGAACTTCACCACTATATGCATAATAGGGAAGCAGGCTGTTGAACATGATGGTGTTTTGCTTGTGATCACATTATACTGCAGCCGGACCTTTGGAGACCAATGTATTGGGGAAGTATGTGTATCGTTCAAGGAACTCTTTAATCGGGAAAGGACACTTTGGGGTCGCCTGAGAACACCTTTTAGTTCTCCAAAGGGAGTTGGAGTTGGCAAGACAGTGAATTACCCCGTGAAGAATGGTGGTTCTAACTCAGGAGGAGTGCTGAAATTTTCGTACAGATTCGGGGAAGTAGTGATTGTTGATCAAACATCCGGCCGGAAAAGTACTTTGGCGTCTGTAGCCCAGTGGGTGGTGCTGATTATAACAGTTGTGACTGGAGTAGATCTGCCGATTGATATTCCATTTTCTTGGAAGATGTTTCATGAGGTGTAG 591 0.4552 MECRKFEITLVSARNLEVRETHKMKVYAKISIAGDPNMEKRTPVDKKGRANPAWNFTTICIIGKQAVEHDGVLLVITLYCSRTFGDQCIGEVCVSFKELFNRERTLWGRLRTPFSSPKGVGVGKTVNYPVKNGGSNSGGVLKFSYRFGEVVIVDQTSGRKSTLASVAQWVVLIITVVTGVDLPIDIPFSWKMFHEV* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1939 196 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Vvi18g1939 196 Pfam C2 domain 5 103 IPR000008 -
Vvi18g1939 196 CDD C2_SRC2_like 5 120 IPR044750 GO:0006952
Vvi18g1939 196 SMART C2_3c 5 108 IPR000008 -
Vvi18g1939 196 Gene3D C2 domain 1 114 IPR035892 -
Vvi18g1939 196 PANTHER INGRESSION PROTEIN FIC1 1 157 - -
Vvi18g1939 196 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 115 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1939 Vvi-Chr18 26702176 26702766 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1939 - - vvi:104882776 400.979