Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1938 ATGGGAAAGCTAAGGGAGTTTAATTTCAGTGGAACATCTATAAACGAGGTACCATTGTCAATTAAACATCTAAACGGTCTTGAAGAGTTGCTTTTAGAAGATTGCAAGAAGCTTGTGGCCTTTTCCGAGAACATTGGTAGTTTGAGCTCTCTTAAATCTCTCAAACTTAAAGGATGTTCAAAATTAAAGGGTCTTCCATCATCAATCAAACATTTAAAAGCTCTTAAAAACTTAGATTTGTCAAGTTGTGAAAATCTTGTGAGGCTTCCTGAGAGTATTTGTAGTTTGAGCTCTCTTGAAACTCTCTTTCTCAATGGGTGTTTAAAATTCAAGGGCTTCCCAGGAGTTAAGGGCCATATGAACAATCTAAGGGTGCTTCGTCTAGATTCAACAGCTATAAAAGAGATACCTTCATCAATTACACATCTAAAAGCCTTGGAATACTTAAATTTGTCAAGGAGCAGCATTGTGAGTCTCCCAGAGAGCATTTGTAGTTTGACATCTCTTAAAACTATAAATGTCGATGAGTGTTCAGCACTCCACAAATTGCCAGAGGACCTAGGGGAGTTGTCACGTTTGGAGATACTTTCATTTTCATACATCAGATGTGACTTGCCCTGTTTGTCAGGCTTATGCTCCTTAAAAGAGTTAACTCTACAGGGTTGCAATCTAAAGCAAGGAGTGATTAAGAGAGATAGCCGCTTGTCCTCATTGAAGACATTAATCCTAATTGATTGCAACTTAAAGGACGGAGTAGTCCTTGATATTTGCCACCTTTTGTCATTGAAAGAGCTACATCTAAGCAGCTGCAACATAAGAGGAATCCCTAATGATATTTTCTGCCTATCATCCTTGGAAATATTGAATCTGGATGGAAACCATTTTAGTAGCATACCTGCTGGCATCAGTCGACTGTATCATCTGACATCACTTAACTTGAGGCACTGCAACAAGCTTCAACAAGTTCCAGAGCTTCCATCAAGTCTACGGCTTTTAGATGTGCATGGCCCTTCAGATGGTACTTCATCAAGCCCAATCAGGCGTAATTGGAATGGAGCATATTTTTCTGATTCTTGGTACAGTGGCAACGGAATTTGTATTGTGATTCCTGGAAGTAGTGGAATACCAAAGTGGATAAAGAACAAGAGAAAGGGATCTGAGATAGAGATAGGGCTTCCTCAGAATTGGCACCTAAACAATGATTTCTTGGGATTTGCCTTATACTGTGTTTATGCTCCCGTTCCCTCTAACCTTGAGGCCATGATTAGAACAGGATTTCTGAATATATCTGAGAAAAGATCCATTTTTGGATCTCTCTTTGGTTTTTATTTAGAAGTAAACTGTGGCATGGCTAGCCATGGCGATGAATTCCAATCCAAGGATATTCTCTCATTTTCATCTGATTGTGAATGCTGCCAGGATTTTGATTTTGATGGTGGTCTATCATGGGTAATATGTTATCCCAAAGTTGCTATTCGGGAGAAGTATGGGACGCACTTCAAGGCTTTATTTCAGGGCTGCTATTTTGGTAAATTGAAAAGCTTTGAGGTGATAGAATGTGGGGTCCATCTTATATACGCCTAA 1584 0.3933 MGKLREFNFSGTSINEVPLSIKHLNGLEELLLEDCKKLVAFSENIGSLSSLKSLKLKGCSKLKGLPSSIKHLKALKNLDLSSCENLVRLPESICSLSSLETLFLNGCLKFKGFPGVKGHMNNLRVLRLDSTAIKEIPSSITHLKALEYLNLSRSSIVSLPESICSLTSLKTINVDECSALHKLPEDLGELSRLEILSFSYIRCDLPCLSGLCSLKELTLQGCNLKQGVIKRDSRLSSLKTLILIDCNLKDGVVLDICHLLSLKELHLSSCNIRGIPNDIFCLSSLEILNLDGNHFSSIPAGISRLYHLTSLNLRHCNKLQQVPELPSSLRLLDVHGPSDGTSSSPIRRNWNGAYFSDSWYSGNGICIVIPGSSGIPKWIKNKRKGSEIEIGLPQNWHLNNDFLGFALYCVYAPVPSNLEAMIRTGFLNISEKRSIFGSLFGFYLEVNCGMASHGDEFQSKDILSFSSDCECCQDFDFDGGLSWVICYPKVAIREKYGTHFKALFQGCYFGKLKSFEVIECGVHLIYA* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1938 527 Gene3D Ribonuclease Inhibitor 1 113 IPR032675 -
Vvi18g1938 527 ProSiteProfiles Leucine-rich repeat profile. 284 306 IPR001611 GO:0005515
Vvi18g1938 527 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 3 115 - -
Vvi18g1938 527 Pfam C-JID domain 373 527 IPR045344 -
Vvi18g1938 527 SMART LRR_typ_2 282 305 IPR003591 -
Vvi18g1938 527 SMART LRR_typ_2 143 166 IPR003591 -
Vvi18g1938 527 SMART LRR_typ_2 259 281 IPR003591 -
Vvi18g1938 527 SMART LRR_typ_2 72 96 IPR003591 -
Vvi18g1938 527 SMART LRR_typ_2 120 142 IPR003591 -
Vvi18g1938 527 SUPERFAMILY L domain-like 3 336 - -
Vvi18g1938 527 ProSiteProfiles Leucine-rich repeat profile. 261 282 IPR001611 GO:0005515
Vvi18g1938 527 Gene3D Ribonuclease Inhibitor 114 349 IPR032675 -
Vvi18g1938 527 Pfam Leucine rich repeat 122 176 IPR001611 GO:0005515
Vvi18g1938 527 Pfam Leucine rich repeat 261 317 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1938 Vvi-Chr18 26685498 26687218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1938 43 334 Receptor kinase-like Gene Family AT1G08590 30.033 2.55e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1938 - - vvi:100256747 1016.14