Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1937 ATGGAGGTGAGATTGTTTATGGTGGTTTCGACAAGAGACACTTCAAGGGGCAAGCACACTTATGCTTCAATCACTCAAAAAGGTTACTGGCAGTTTGAAATGGGAGAGTTTCTTATTGGATACCAATCAACAGGCTTTTGTGAGGCAGGTTATGCAGCTATTGTAGATTCAGGAACATCCTTAATTGCTGGTCCAATGACGATCGTGACTGAAATCAACCATGCAACTGGAGTAGAAGGAATCGTGAGCCAGGAATGTAAAGAAGTAGTTTTCCAATATGGAAAAATGATATGGGATCATCTAATTTCAAGGATACAACCTGATACAGTATGTTCATAG 339 0.4012 MEVRLFMVVSTRDTSRGKHTYASITQKGYWQFEMGEFLIGYQSTGFCEAGYAAIVDSGTSLIAGPMTIVTEINHATGVEGIVSQECKEVVFQYGKMIWDHLISRIQPDTVCS* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1937 112 Gene3D - 78 112 - -
Vvi18g1937 112 Pfam Eukaryotic aspartyl protease 15 83 IPR033121 -
Vvi18g1937 112 SUPERFAMILY Saposin 82 112 IPR011001 -
Vvi18g1937 112 FunFam Uncharacterized protein 78 112 - -
Vvi18g1937 112 Pfam Saposin-like type B, region 2 84 112 IPR008138 -
Vvi18g1937 112 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 53 64 IPR001969 GO:0004190|GO:0006508
Vvi18g1937 112 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 15 79 IPR001461 GO:0004190|GO:0006508
Vvi18g1937 112 Gene3D Acid Proteases 5 77 IPR021109 -
Vvi18g1937 112 ProSiteProfiles Saposin B type domain profile. 81 112 IPR008139 -
Vvi18g1937 112 SUPERFAMILY Acid proteases 16 86 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1937 Vvi-Chr18 26650494 26650832 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1937 K08245 - vvi:100261280 178.333