Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1936 ATGGAATTTTGGATGTTCGAGATCACCCTCATTTTAGCTCGAAATCTTGAGGTACGGGAAACACAAAAAACGAAGGTTTACGCAAAGATTTCAATTGCAGGCCATCCCAACACGGAGAAAAGAACCCCAGTGGACAAGAAAGGGGGGGCCAACCCAGCATGGAACTTCACCACTACATGCAAGATAGGGAAGCAGGCAGTTGAACATGATGGTGTTATGCTTCTGATCGAATTATACCGCAGCCGGACCTTTGGAGACCAATATATTGGGGAAGTACGTGTATCGTTCAAGGAGCTCTTTAATCGGGAAAGGACACTTTGGGGTCGTCTGACAACACTTTTTAGTTGTCCAAAGGGAGCTGGAGTTGGCAAGACTGTGAAATACCCGGTGAACAATGGTGGTTCTCATTCATCAGGAGTGCTGAAATTTTCATACAGATTTAGGAAAGAAGTGATTGTTAATCAACCATCCGGCGGGGGAAGTGCTTTGGGGTTGGCAGCGTCGGGAGCCAAGTGGGTGGAGCTGATTATAACAGTTGCGACTGGGATTGATATTCCATTTTCTTGGGAAGGTGTTTAA 579 0.4611 MEFWMFEITLILARNLEVRETQKTKVYAKISIAGHPNTEKRTPVDKKGGANPAWNFTTTCKIGKQAVEHDGVMLLIELYRSRTFGDQYIGEVRVSFKELFNRERTLWGRLTTLFSCPKGAGVGKTVKYPVNNGGSHSSGVLKFSYRFRKEVIVNQPSGGGSALGLAASGAKWVELIITVATGIDIPFSWEGV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1936 192 CDD C2_SRC2_like 6 143 IPR044750 GO:0006952
Vvi18g1936 192 Gene3D C2 domain 4 145 IPR035892 -
Vvi18g1936 192 PANTHER INGRESSION PROTEIN FIC1 6 154 - -
Vvi18g1936 192 SMART C2_3c 5 108 IPR000008 -
Vvi18g1936 192 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 145 IPR035892 -
Vvi18g1936 192 Pfam C2 domain 5 103 IPR000008 -
Vvi18g1936 192 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1936 Vvi-Chr18 26632986 26633564 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1936 - - vvi:104882777 381.719