Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1935 ATGGAATGGAGGATGTTCAAGATCACCCTCATTTCAGCTCGAAATCTTGATGTACGGGAAACACAAAAAACGAAGGTTTACGCAAAGATTTCAATTGCAGGCCATCCCAACACGGAGAAAAGAACCCCAGTGGACAAGAAAGGCGGGGCCAACCCAGCATGGAACTTCACCACTACATGCATGATAGGGAAGCAGGCTGTTGAACATGATGTTGTTAAGCTTGAGATCAAATTATACCGCAGCCGGGCCCCTGGAGACAAATATATTGGGAAGGTATGTGTATCGTTCAAGGAACTCTTTAATCTGGAAAGGACACTTTGGGGTCGTCTGAGAACACTTTTTAGTTGTCCAAAGGGAGCTGGAGTTGGCAAGACAGTGAAATACTCGGTGAAAAAAAATGGTGGTTCTGATTCATCAGGAGTGCTGAAATTTTCATACAGATTTGGGGAAGTAGTGATTGTTAATCAACCATCCGGACATGGAAGTACTTCGCCGTTGGTAGCCCAGTTGGTGGTGCTGTTTATAAGAGTTGTGATTGCAGCAGCTCTGTCGATTGATATTCCATTTTCTTGGGTAGGTGTTTAA 585 0.4427 MEWRMFKITLISARNLDVRETQKTKVYAKISIAGHPNTEKRTPVDKKGGANPAWNFTTTCMIGKQAVEHDVVKLEIKLYRSRAPGDKYIGKVCVSFKELFNLERTLWGRLRTLFSCPKGAGVGKTVKYSVKKNGGSDSSGVLKFSYRFGEVVIVNQPSGHGSTSPLVAQLVVLFIRVVIAAALSIDIPFSWVGV* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1935 194 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Vvi18g1935 194 CDD C2_SRC2_like 8 119 IPR044750 GO:0006952
Vvi18g1935 194 SMART C2_3c 5 108 IPR000008 -
Vvi18g1935 194 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 117 IPR035892 -
Vvi18g1935 194 Gene3D C2 domain 4 149 IPR035892 -
Vvi18g1935 194 PANTHER INGRESSION PROTEIN FIC1 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1935 Vvi-Chr18 26622275 26622859 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1935 - - vvi:104882778 391.734