Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1929 ATGGATTCCACTAGCAATTCTATGAGACCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTCTAAATGGAGGTACGATGTGTTCTTGAGTTTCAGAGGCGAAGATACCCGCGACAGCTTTACTTCTCATCTCTACTCGGCTTTGGATCGTGGCATCATTAAAACCTTTAGAGACGATAAAGAACTTCGAAAGGGAGGAGAGATTGCACCCGAACTCTTAAAAGCTATTGAAGAATCAAGGATAGCCATTCTTGTCTTCTCGAAAACCTATGCTCATTCCAAGTGGTGTTTGCTGGAGTGCCAGGAAGAAAAGGGACGAAAAGTTTTTCCTATCTTCTATCATGTAGAGCCGTCTGAAGTAAGGAAACAGACTGGGATTTATGGAGAAGCATTTAACAATCACGAGAGCAATGCAGACGAGGAGAAGAAGAAGAAGATAGAGAAGTGGAGGACTGCCTTATGGAAAGTCGGTAATTTGAGTGGATTTCCTCTGCAGGATGGGTAA 516 0.4225 MDSTSNSMRPSSSSSSSSSSSSSNSKWRYDVFLSFRGEDTRDSFTSHLYSALDRGIIKTFRDDKELRKGGEIAPELLKAIEESRIAILVFSKTYAHSKWCLLECQEEKGRKVFPIFYHVEPSEVRKQTGIYGEAFNNHESNADEEKKKKIEKWRTALWKVGNLSGFPLQDG* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1929 171 Gene3D - 21 171 IPR035897 -
Vvi18g1929 171 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 166 IPR035897 -
Vvi18g1929 171 ProSiteProfiles TIR domain profile. 27 171 IPR000157 GO:0007165
Vvi18g1929 171 FunFam Disease resistance protein (TIR-NBS-LRR class) 25 171 - -
Vvi18g1929 171 MobiDBLite consensus disorder prediction 1 25 - -
Vvi18g1929 171 SMART till_3 28 163 IPR000157 GO:0007165
Vvi18g1929 171 PANTHER TMV RESISTANCE PROTEIN N-LIKE 18 170 - -
Vvi18g1929 171 Pfam TIR domain 29 157 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1929 Vvi-Chr18 26562393 26562908 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1929 31 168 Miscellaneous Gene Families AT1G57670 44.444 3.53e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1929 - - vvi:100256836 277.33