Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1925 ATGGCTTCCTCTAGCAATTCTAAGAGACCCTTTTACTCTTCTTCTTCTTCTAATTCTAAATGGAGGTACGATGTGTTCTTGAGTTTCAGAGGCGAGGATACCCGCAACAACTTTACTAGTCATCTCTACAAGGCTTTGGATCATGCCAACATTGAAACCTTCAAAGATGATAAAGAACTTCGAAGGGGAGACGAGATTGCACCCGAGCTCCTAAAAGCTATTGAAGGATCAAGGATTGCCCTTATTATCTTCTCGAAAACCTATGCTCATTCCAAGTGGTGCTTGGATGAACTCGTCAAGATCATGGAGTGCAAGGAAGAAAAGGGACAAAAGGTTTTTCCTATTTTCTATCATGTAGAGCCGTCTGAAGTCAGGAAACAGACTGGGATTTATGGAGAAGCATTTAACAATCACGAGAGCAATGCAGACGAGGAGAAGAAGAAGAAGATAGAGAAGTGGAGGACTGCCTTATGGAAAGCCGGTAATTTGAGTGGATTTCCTCTGCAGGATAGGTAA 516 0.4244 MASSSNSKRPFYSSSSSNSKWRYDVFLSFRGEDTRNNFTSHLYKALDHANIETFKDDKELRRGDEIAPELLKAIEGSRIALIIFSKTYAHSKWCLDELVKIMECKEEKGQKVFPIFYHVEPSEVRKQTGIYGEAFNNHESNADEEKKKKIEKWRTALWKAGNLSGFPLQDR* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1925 171 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 171 - -
Vvi18g1925 171 SMART till_3 22 163 IPR000157 GO:0007165
Vvi18g1925 171 Pfam TIR domain 23 157 IPR000157 GO:0007165
Vvi18g1925 171 ProSiteProfiles TIR domain profile. 21 171 IPR000157 GO:0007165
Vvi18g1925 171 Gene3D - 19 171 IPR035897 -
Vvi18g1925 171 PANTHER TMV RESISTANCE PROTEIN N-LIKE 16 170 - -
Vvi18g1925 171 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 166 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1925 Vvi-Chr18 26507474 26507989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1925 25 168 Miscellaneous Gene Families AT1G57670 45.517 2.60e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1925 - - vvi:100256836 326.635