Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1924 ATGAGAAGTCTAAGAAAGCTTAATTTAAGTCATACAAGTATAATGGAATTAACATCATCAATTAGGCATCTAAATGGGCTTGAAGAGTTGGACTTAAGGAACTTCCCTAGCGTGGCAGAAGGAATCCTCGATAAGATTTTCCATCTATCCTCGTTGGTAAAATTATCTCTTACTAAATGCAAGCCAACGGAAGAAGGAATCCCTGGTGATATTTGGAACCTATCTCCACTGCAACAATTATCTCTACGTGACTGCAATCTAATGGAAGGAAAGATCCTCAATCATATTTGCCATCTAACATCCTTGGAAGAATTATATCTGGGTTGGAACCATTTTAGTAGCATACCTGCTGGCATCAGTCGACTTTCTAATCTAAAGGCCCTTGACTTGAGTCATTGCAAGAACCTTCAACAAATTCCAGAGCTTCCATCAAGTCTACGATTTTTAGATGCGCACTGTTCGGATGGTATTTCATCAAGCCCCTCGCTTCTACCTATTCATTCTATGGTCAATTGCTTCAAATCAGAAATTGAGGTATGA 540 0.3907 MRSLRKLNLSHTSIMELTSSIRHLNGLEELDLRNFPSVAEGILDKIFHLSSLVKLSLTKCKPTEEGIPGDIWNLSPLQQLSLRDCNLMEGKILNHICHLTSLEELYLGWNHFSSIPAGISRLSNLKALDLSHCKNLQQIPELPSSLRFLDAHCSDGISSSPSLLPIHSMVNCFKSEIEV* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1924 179 SMART LRR_typ_2 1 24 IPR003591 -
Vvi18g1924 179 SMART LRR_typ_2 99 122 IPR003591 -
Vvi18g1924 179 Pfam Leucine Rich Repeat 101 117 IPR001611 GO:0005515
Vvi18g1924 179 Pfam Leucine Rich Repeat 124 141 IPR001611 GO:0005515
Vvi18g1924 179 SUPERFAMILY L domain-like 2 162 - -
Vvi18g1924 179 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 2 103 - -
Vvi18g1924 179 Gene3D Ribonuclease Inhibitor 1 174 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1924 Vvi-Chr18 26502442 26503608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1924 1 149 Receptor kinase-like Gene Family AT4G13920 36.424 3.96e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1924 - - vvi:109121440 297.36