Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1917 ATGGCTTCCTCTACCCAAAAACCCTCTTCTTCTTCTACCTCAGTCCGTAAATATGAGTTCGAAGTGTTCTTGAGTTTTAGAGGTGAAGACACCCGCAACAATTTTACGGATCATTTATTCGTAAATTTGCATGGGATGGGGATTAAGACTTTCAGAGACGATCAACTTGAAAGAGGAGAGGAGATCAAATCAGAACTTTTGAAAACTATTGAAGAATCAAGAATTTCCATAGTTGTGTTCTCAAAAAACTATGCTCATTCCAAGTGGTGTTTGGATGAGTTAGCGAAGATCATGGAGTGCAGGGAAGAAATGGAACAAATAGTCTTTCCGGTGTTCTACCACGTGGATCCTTGTGATGTGCGAAAGCAAACAGGGAGCTTCGGAGAGGCATTTTCCTTTCATGAAAGAAATGTAGATGGGAAAAAGGTGCAAAGGTGGAGGGATTCCTTGACTGAAGCAAGCAATCTAAGTGGTTTCCATGTGAATGATGGGTATGATCATTATTTAATTTTTTTTTTCTTTATAATAATATTCAAGTTGAAGAATTTTTATTTTTTTATATTAACAAAATGTCTTCTGTTATAG 585 0.3692 MASSTQKPSSSSTSVRKYEFEVFLSFRGEDTRNNFTDHLFVNLHGMGIKTFRDDQLERGEEIKSELLKTIEESRISIVVFSKNYAHSKWCLDELAKIMECREEMEQIVFPVFYHVDPCDVRKQTGSFGEAFSFHERNVDGKKVQRWRDSLTEASNLSGFHVNDGYDHYLIFFFFIIIFKLKNFYFFILTKCLLL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1917 194 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 170 - -
Vvi18g1917 194 Pfam TIR domain 20 154 IPR000157 GO:0007165
Vvi18g1917 194 PANTHER TMV RESISTANCE PROTEIN N-LIKE 10 163 - -
Vvi18g1917 194 Gene3D - 13 177 IPR035897 -
Vvi18g1917 194 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Vvi18g1917 194 ProSiteProfiles TIR domain profile. 18 181 IPR000157 GO:0007165
Vvi18g1917 194 SMART till_3 19 156 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1917 Vvi-Chr18 26402820 26405256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1917 14 161 Miscellaneous Gene Families AT1G57830 39.189 8.46e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1917 - - vvi:100250024 336.65