Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1906 ATGGCTTCCTCTACCCAAAAACCCTCTTCTTCTTCTACCTCAGTCCGTAAATATGAGTTCGAAGTGTTCTTGAGTTTTAGAAGTGAAGACACCCGCAACAATTTTACGGATCATTTATTCGTAAATTTGGATGGGATGGGGATTAAGACTTTCAGAGACGATCAACTTGAAAGAGGAGAAGAGATCAAATCAGAACTTTTGAAAACTATTGAAGAATCAAGAATTTCCATAGTTGTGTTTTCAAAAAACTATGCTCATTCCAAGTGGTGTTTGGATGAGTTAGCAAAGATCATGGAGTGCAGGGAAGAAATGGAACAAATAGTCTTTCCGGTGTTCTACCACGTGGATCCTTGTGATGTGCAAAAGCAAACAGGGAGCTTCGGAGAGGCATTTTCCATTCATGAAAGAAATGTAGATGTGAAAAAGGTGCAAAGGTGGAGGGATTCCTTGACTGAAGCAAGCAATCTAAGTGGTTTCCATGTGAATGATGGAAATTTGAAAAGTCTTCCAAACAGTATATGTGGGTTGAAATCCCTCGAAGGCCTCTCTCTCAATGGTTGTTCAAATCTAGAGGCTTTTTCAGAGATCACGGAGGATATGGAACAATTAGAACGCCTTTTTTTACGTGAGACGGGTATCTCAGAGCTGCCATCATCAATCGAACATATGAGAGGTCTTAAATCCTTGGAATTGATCAATTGTGAGAACCTTGTGGCTCTTCCCAATAGCATCGGTAATTTGACATGTCTTACTAGTCTTCATGTTCGTAACTGTCCAAAGCTCCACAACTTGCCTGACAATTTGAGAAGCCTGCAATGTTGCTTAACAATGCTAGATCTAGGTGGTTGCAATCTGATGGAAGAAGAAATCCCCAATGATTTATGGTGTCTATCCTCACTGGAATTTTTAAACGTAAGTGAAAACCATATGCGTTGCATACCTGCTGGCATCACTCAACTTTGTAAGCTTGGTACCCTTCTCATGAATCATTGTCCGATGCTTGAAGTAATTGGAGAGCTTCCATCAAGTATCATTTTCATGCGGAGACTTAATATTATCATTCCAGGAAGTAGTGGAATACCAGAATGGGTAAGTCATCAAAGAATGGGATGTGAAGTAAGTGTAGAACTTCCAATGAATTGGTATGAAGATAATAACTTGTTATTAGGATTTGTTTTATTCTTCCATCATGTTCCCCTTGATGATGATGAATGCGTGAGAACATCTGGTTTTATTCCAGAATGTAAATTGGCGATATCCCATGGTGATCAAACTGAACGACTGGATAATATTAGTTTTTATCATCGTTGTAAAACATACTCTATTAGCGGTTTATCATATAGCAGCAGACGCTACGACAGTGGTAGCACATCAGATCCAGCACTGTGGGTGACGTATTTCCCTCAAATTCGCATTCCAAGCAAGTATCGATCCAGAAAGTGGAACAACTTCAAGGCTCACTTTGACAATCCTGTTGGTAATGCCTCTTTTACATGTGGCGAAAACGCATCCTTTAAAGTGAAAAGTTGTGGGATACATCTCATATACGCCCAAGATCAGAAGCATTGGCCTCAGCCGTCGAGAAAAAGGCCTGCTAATAGAGAAGATCACTCACCCAAGAAAAAAAACCTCTAG 1635 0.4006 MASSTQKPSSSSTSVRKYEFEVFLSFRSEDTRNNFTDHLFVNLDGMGIKTFRDDQLERGEEIKSELLKTIEESRISIVVFSKNYAHSKWCLDELAKIMECREEMEQIVFPVFYHVDPCDVQKQTGSFGEAFSIHERNVDVKKVQRWRDSLTEASNLSGFHVNDGNLKSLPNSICGLKSLEGLSLNGCSNLEAFSEITEDMEQLERLFLRETGISELPSSIEHMRGLKSLELINCENLVALPNSIGNLTCLTSLHVRNCPKLHNLPDNLRSLQCCLTMLDLGGCNLMEEEIPNDLWCLSSLEFLNVSENHMRCIPAGITQLCKLGTLLMNHCPMLEVIGELPSSIIFMRRLNIIIPGSSGIPEWVSHQRMGCEVSVELPMNWYEDNNLLLGFVLFFHHVPLDDDECVRTSGFIPECKLAISHGDQTERLDNISFYHRCKTYSISGLSYSSRRYDSGSTSDPALWVTYFPQIRIPSKYRSRKWNNFKAHFDNPVGNASFTCGENASFKVKSCGIHLIYAQDQKHWPQPSRKRPANREDHSPKKKNL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1906 544 ProSiteProfiles TIR domain profile. 18 154 IPR000157 GO:0007165
Vvi18g1906 544 Pfam TIR domain 20 157 IPR000157 GO:0007165
Vvi18g1906 544 SUPERFAMILY L domain-like 148 365 - -
Vvi18g1906 544 SMART LRR_typ_2 297 320 IPR003591 -
Vvi18g1906 544 SMART LRR_typ_2 200 223 IPR003591 -
Vvi18g1906 544 SMART till_3 19 156 IPR000157 GO:0007165
Vvi18g1906 544 MobiDBLite consensus disorder prediction 523 544 - -
Vvi18g1906 544 MobiDBLite consensus disorder prediction 521 544 - -
Vvi18g1906 544 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 170 - -
Vvi18g1906 544 Pfam C-JID domain 358 520 IPR045344 -
Vvi18g1906 544 PANTHER TMV RESISTANCE PROTEIN N-LIKE 11 164 - -
Vvi18g1906 544 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Vvi18g1906 544 Gene3D Ribonuclease Inhibitor 190 378 IPR032675 -
Vvi18g1906 544 Gene3D - 13 184 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1906 Vvi-Chr18 26218865 26223822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1906 22 161 Miscellaneous Gene Families AT1G57830 38.571 1.70e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1906 - - vvi:100248194 749.969