Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1900 ATGGAAGGAGAGACTATCAAGATTATGAACCAAGACCTTGTGAGGTTGGATCGTTTTGATGGTTCCAACTTCACTAGGTGGCAAGACAAGACTTTCAGAGACGATCAACTTGAAAGAGGAGAGGAGATCAAATCAGAACTTTTGAAAACTATTAAAGAATCAAGAATTTCCATAGTTGTGTTCTCAAAAAACTATGCTCGTTCCAAGTGGTGTTTGGATGAGTCAGCGAAGATCATGGAGTGCAGGGAAGAAATGGAACAAATAGTCTTGCCAGTGTTCTACCATGTGGATCCTTCTAATGTGCGAAAGCAAACAGGGAGCTTCGGAGAGGCATTTTCCATTCATGGAAGAAATGTAGATGAGAAAAAGGTGCAAAGGTGGAGGGTTTCTTTGATTGAAGCAAGTAATCTAAGTGGTTTCCGTGTGAATGATGGGTAA 438 0.4087 MEGETIKIMNQDLVRLDRFDGSNFTRWQDKTFRDDQLERGEEIKSELLKTIKESRISIVVFSKNYARSKWCLDESAKIMECREEMEQIVLPVFYHVDPSNVRKQTGSFGEAFSIHGRNVDEKKVQRWRVSLIEASNLSGFRVNDG* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1900 145 ProSiteProfiles TIR domain profile. 1 135 IPR000157 GO:0007165
Vvi18g1900 145 SMART till_3 18 137 IPR000157 GO:0007165
Vvi18g1900 145 Gene3D - 22 145 IPR035897 -
Vvi18g1900 145 PANTHER TMV RESISTANCE PROTEIN N-LIKE 29 144 - -
Vvi18g1900 145 Pfam TIR domain 30 133 IPR000157 GO:0007165
Vvi18g1900 145 SUPERFAMILY Toll/Interleukin receptor TIR domain 29 140 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1900 Vvi-Chr18 26121589 26124946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1900 53 143 Miscellaneous Gene Families AT5G45220 37.634 1.70e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1900 - - vvi:100263700 213.772