Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1889 ATGGTGTGTTTTACAGGGACAGTGTGGACAGCTGCAGCTCATGCAGTGGCAGCAGTGATAGGATCAGGAGTGTTGGCTGTGCCGTGGAGTGTGGCTCAGATGGGATGGCTTTTTGGCCCCCTTGCCCTCTTCACCTTTGCTGTTGTTACTTACTACACTGCTCGTATGCTTGCGGATTGTTATAGAACTCCTGACCCTGTTCATGGCTCACGGAACTACACCTACAGTGATGCTGTAAGAGCATGCTTAGGAACAAGATATGTCTACATTTGTGGCATTATTCAATACATCCTTCTTTGGGGTACCATGGTTGGATATGTGATAACTGCTGCTACAAGCATGGCTTCTATCAAAAGAACGAATTGTTTCCACCAGAAGGAGCCAAATGCCGATTGCAAAGCCAAAGTGTCGGGGAATTTGTTTATGCTAATTTATGGGGGAGTAGAAATTTTATTGTCTCAATTTCCAAGCCTTGAGAAAATAACAATACTTTCAGTTGTTGCAGCTACAATGTCATTTGGCTACTCATTCATCGCCTTGTATTTATGCATTGAGAAATTTGCTTCACACCATGACTTGAAAGCCAGCAATTTAACTGGAGTGGATGTGGGAAAAAATGACATATCTCAATCCACTAAAGTTTGGCAATCTTTCCAAGCTCTGGGAAACATTGCCTTTGCTTACACCTTTGCCAATATCTTGATTGAAATTCAGGATACATTGAAATCACCTCCAGCAGAAAACAAAACAATGAAGAGAGCAACACTATATGGCATTGGAGTGACAACAGCATTTTATCTGTCCATTGGGGTCATGGGTTATATGGCCTTTGGAAATGATGCTCCTGGAAATGTTCTTACTGGATTCCATGAACCCTTTTGGCTTGTTGATCTTGCTAATTTTGCTGTCATTATACATTTAAGTGGATCTTTTCAGGTATTTGCACAACCAATCTTTACAGTATATGAGAAGTGGATAGCATCAAGATGGCCACCTACAAGCTTCTTTCTCCATGTCTATACAATAAAGCTTCCATTCCCCAGACCATGTCTCTTCCAATTCACCCTCTGCAAGCTTCTTCTCCGCACCCTTTTCATCATCCTGACCACAACCATTGCTATGATGCTTCCATTCTTCAATGCAGTTCTGGGTTTTCTAGGAGCCATTTCATTTTGGCCATTGACGGTGTATTTCCCAGTGACCATGCATCTGTCCCACTCAAAGGTGAAGAGAAGAAGCCGTGAATGGATGATGTTGCAGAGCTTGAGCATGGTTTCACTACTAGTTTCAGCCATCGCTACTGTTGGTTCAATTATTGATATCGTCCACAGACTTGAGCATACTAAACTATTTAGTGCAAAATTGTAG 1368 0.4218 MVCFTGTVWTAAAHAVAAVIGSGVLAVPWSVAQMGWLFGPLALFTFAVVTYYTARMLADCYRTPDPVHGSRNYTYSDAVRACLGTRYVYICGIIQYILLWGTMVGYVITAATSMASIKRTNCFHQKEPNADCKAKVSGNLFMLIYGGVEILLSQFPSLEKITILSVVAATMSFGYSFIALYLCIEKFASHHDLKASNLTGVDVGKNDISQSTKVWQSFQALGNIAFAYTFANILIEIQDTLKSPPAENKTMKRATLYGIGVTTAFYLSIGVMGYMAFGNDAPGNVLTGFHEPFWLVDLANFAVIIHLSGSFQVFAQPIFTVYEKWIASRWPPTSFFLHVYTIKLPFPRPCLFQFTLCKLLLRTLFIILTTTIAMMLPFFNAVLGFLGAISFWPLTVYFPVTMHLSHSKVKRRSREWMMLQSLSMVSLLVSAIATVGSIIDIVHRLEHTKLFSAKL* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1889 455 Gene3D Amino acid/polyamine transporter I 5 446 - -
Vvi18g1889 455 FunFam Amino acid permease 6 3 445 - -
Vvi18g1889 455 PANTHER OS05G0424000 PROTEIN-RELATED 8 439 - -
Vvi18g1889 455 Pfam Transmembrane amino acid transporter protein 5 439 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1889 Vvi-Chr18 25899708 25904349 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1889 5 453 Organic Solute Cotransporters AT5G09220 50.221 3.08e-160 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1889 K24917 - vvi:100253326 872.463