Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1886 ATGGTTGGTACTGGTATTTTGGCTTTGCCATGGAGTATTTCTCAATTGGGTTGGATTGTTGGACCGGTTGCTATACTTGCATTTCCAGTAATTACATATTATTATGCCATGCTTCTCTGCGACTGTTATAGAACTCCTGACCCGATCAAGGGAAGAAGAAATCGCACATATGTGGATGCTGTGAGAGCATTTTTAGGCAAAAGAAATGTAGTTATATGTGGTGTCTTGCAATATGCAGCACTGTGGGGGACGATGATCGGTTACACAATTACAACTGCCATTAGTATAGCATCTGTGAAGAGATCAATTTGCTTCCATAGACATGATGCAAGATGTGATGTACAAGGAAATATATATATGATGGCATTTGGAGCAATGGAAATTGTTCTATCTCAATTTCCAAACTTAGAAAAAGTGACGATTCTTTCAGTAATTGCTACAGCTACATCATTTATTTATTCACTTGTTGCATTGGGTCTATCTGTTGCAAAACTCTCTACATACCATGAGCTTAGAGGAAGTACACTGGTGGCTAATGTGGGAGAGGATATTGCTTCATTAACCAAGGTTTGGCATGTTTTCCAAGCTCTTGGAAATATTGCTTTTGCTTACACTTACTCCTGGCTGCTATTAGAAATTCAGGATACATTAAAGTCACCACCACCAGAGAATCAAGTAATGAAGAAAGTCTCCTTGTATACTATTGCTGGAACATCAATTTTTTATTCATCTTTGGGATTCATAGGTTATGCAGCATTTGGAAGTCATGCTCCAGGAAATGTTCTCACGGGATTTGGTGAACCATTTTGGCTTGTTGACATTGGCCACATTTCCGTGATCATACATTTAATTGGAGCTTATCAGGTGTTTGGTCAAGTAGTTTTTGCTACAAACGAGAGGCTACTCACATCCAGATGCTCCACAACATCAGTTTTTAATCGAACTTGCAACATAAGATTTCCAGGCACAAGAAATGGATCCTTTCAGTTCTCATTAAACAGGCTTCTCATGCGCACAATCTTTGTTATTTTCACAACTTTGGTTGCCATGATATTTCCATTCTTCAATGCAATCCTATCAATTCTTGGCTCAATTTCCTTCTGGCCAATAACAGTCTACTTCCCCATGCAAATGTACATGATTCAAGCAAAGATCGAGAAGGGAACTCCTACTTGGACAGTCTTATATGTTCTAAGCTTTGTTTGTTTGGTTGTTTCCCTTGTTGCTATCGTTGGTTCAGTTGCCGATATCTCCCAGACTCTTAGGCATGCAAAAATATTTCATATTGAACTCTAG 1296 0.3881 MVGTGILALPWSISQLGWIVGPVAILAFPVITYYYAMLLCDCYRTPDPIKGRRNRTYVDAVRAFLGKRNVVICGVLQYAALWGTMIGYTITTAISIASVKRSICFHRHDARCDVQGNIYMMAFGAMEIVLSQFPNLEKVTILSVIATATSFIYSLVALGLSVAKLSTYHELRGSTLVANVGEDIASLTKVWHVFQALGNIAFAYTYSWLLLEIQDTLKSPPPENQVMKKVSLYTIAGTSIFYSSLGFIGYAAFGSHAPGNVLTGFGEPFWLVDIGHISVIIHLIGAYQVFGQVVFATNERLLTSRCSTTSVFNRTCNIRFPGTRNGSFQFSLNRLLMRTIFVIFTTLVAMIFPFFNAILSILGSISFWPITVYFPMQMYMIQAKIEKGTPTWTVLYVLSFVCLVVSLVAIVGSVADISQTLRHAKIFHIEL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1886 431 Pfam Transmembrane amino acid transporter protein 1 416 IPR013057 -
Vvi18g1886 431 PANTHER OS05G0424000 PROTEIN-RELATED 2 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1886 Vvi-Chr18 25876273 25883232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1886 1 428 Organic Solute Cotransporters AT1G58360 45.833 1.33e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1886 K24917 - vvi:100260163 849.351