Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1885 ATGGCTTCTTCAGCACACGTTCTCGGCAGCTTTCTTACCTTTTCCCATGAACCAAACAAACCAAACGCAAGAACATGGAAACCATTCTTAGGGCAGACTTTGAGATTGAATTCTGATTCTCAGAGGCTCTGTAAACAGGTCCGTAAGAAGGCGTCGTTTCATGTGGTGAATGAGAAGGTGGTGGGAATCGATTTGGGAACGACGAACTCTGCCGTGGCGGCGATGGAGGGAGGGAAGCCGACGATCGTGACTAACGCGGAGGGGCAGAGGACGACGCCATCGGTGGTGGCGTATACGAAGAATGGGGATATGCTGGTAGGGCAGATCGCTAAGCGGCAGGCGGTGGTGAATCCAGAGAACACCTTCTTCTCTGTGAAGCGGTTCATCGGGCGGAAGATGGACGAGGTGGGTGAGGAAGCAAAGCAGGTTTCTTATAAGGTTGTGAGGGATGAAAATGGGAATGTTAAGTTGGAGTGTCCGGTTCTTGCTAAGCTGTTCGCGGCTGAGGAAATTTCTGCACAGGTTTTGAGAAAGCTTGCTGATGATGCTTCAAAGTTTTTGAATGATAAAGTTACCAAAGCTGTGGTTACGGTGCCAGCATATTTTAATGATTCTCAAAGGACAGCAACAAAAGATGCAGGTCGTATTGCTGGTCTAGAAGTCCTTCGGATCATAAATGAACCTACTGCAGCTTCACTGGCATATGGTTTTGAAAAGAAGAATAATGAAACAATTCTTGTATTTGATCTTGGAGGTGGTACATTTGATGTTTCAGTGCTTGAGGTTGGAGATGGAGTGTTTGAGGTGCTTTCTACCTCAGGTGATACACATTTGGGAGGTGATGACTTTGACAAGAGAATTGTTGATTGGCTAGCACAAAACTTTAAGAGAGATGAAGGTATAGATCTTCTAAAAGACAAGCAAGCTCTTCAGCGGCTCACAGAGACTGCCGAGAAAGCAAAGATTGAGCTTTCATCTTTAACTCAGACTAATATTAGTTTACCATTCATTACTGCCACTTCCGAAGGGCCTAAACACATTGAAACCACCCTTACAAGAGCCAAGTTTGAAGAATTATGTTCAGACTTGCTAGACCGGCTGCGTACACCTGTTGAAACTGCATTGAGGGATGCAAAACTCTCTTTCAAAGATTTGGATGAAGTTATCCTTGTTGGTGGTTCAACGCGTATCCCAGCTGTTCAGGATCTTGTAAGGAAGATGACTGGAAAAGAACCCAATGTTACAGTTAATCCTGATGAAGTTGTTGCACTTGGTGCTGCGGTTCAGGCTGGTGTTTTAGCTGGAGATGTTAGTAACATTGTGCTATTGGATGTGACACCATTGTCTCTGGGTTTGGAAACCCTGGGTGGTGTCATGACAAAGATCATACCAAGGAACACAACTTTACCAACTTCCAAATCTGAGGTTTTCTCTACGGCAGCAGATGGGCAAACCAGTGTTGAGATCAATGTCCTCCAGGGTGAGAGAGAGTTTGTGAGGGACAACAAATCTCTGGGTAGCTTCCGTTTGGATGGGATTCCTCCAGCTCCCCGTGGAGTTCCCCAGATTGAAGTCAAATTTGATATTGATGCCAATGGTATCCTTTCAGTCACGGCAGTTGACAAGGGAACTGGAAAGAAGCAGGACATCACCATAACTGGTGCTAGCACCTTACCCAATGACGAGGTGGATAGAATGGTGAAAGAAGCTGAAAAATTTGCAAAGGAGGACAAGGAGAAGAGGGATGCAATAGACACAAAGAACCAGGCTGATTCTGTTGTGTACCAAACTGAAAAGCAGCTAAAAGAACTGGGAGACAAAGTACCTGCTCCAGTCAAGGGCAAGGTGGAGGCTAAACTAAAGGAGCTCAAGGATGCCATCTCCAGTGGGTCAACAACCCAAACTATCAAGGACGCAATGGCTGCACTGAACCAAGAGGTCATGCAGATAGGGCAATCTCTCTACAGCCAGGCTGGTGCACCTGGTGCTGGGGCTGGAGCTGGAGCGGCTGGATCAACTGACAGCAAACCTGATGGAGATGTTATCGATGCAGACTTCACCGAGAGCAAGTGA 2073 0.4645 MASSAHVLGSFLTFSHEPNKPNARTWKPFLGQTLRLNSDSQRLCKQVRKKASFHVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDMLVGQIAKRQAVVNPENTFFSVKRFIGRKMDEVGEEAKQVSYKVVRDENGNVKLECPVLAKLFAAEEISAQVLRKLADDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAQNFKRDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTNISLPFITATSEGPKHIETTLTRAKFEELCSDLLDRLRTPVETALRDAKLSFKDLDEVILVGGSTRIPAVQDLVRKMTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSNIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTAVDKGTGKKQDITITGASTLPNDEVDRMVKEAEKFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAPVKGKVEAKLKELKDAISSGSTTQTIKDAMAALNQEVMQIGQSLYSQAGAPGAGAGAGAAGSTDSKPDGDVIDADFTESK* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1885 690 Gene3D - 61 430 - -
Vvi18g1885 690 FunFam Chaperone protein DnaK HSP70 429 611 - -
Vvi18g1885 690 FunFam Molecular chaperone DnaK 558 660 - -
Vvi18g1885 690 SUPERFAMILY Actin-like ATPase domain 59 239 IPR043129 -
Vvi18g1885 690 FunFam Molecular chaperone DnaK 280 367 - -
Vvi18g1885 690 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 435 591 IPR029047 -
Vvi18g1885 690 PANTHER HEAT SHOCK PROTEIN 70KDA 60 612 IPR013126 GO:0005524|GO:0140662
Vvi18g1885 690 SUPERFAMILY Actin-like ATPase domain 242 433 IPR043129 -
Vvi18g1885 690 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 585 663 IPR029048 -
Vvi18g1885 690 Gene3D Actin; Chain A, domain 4 280 367 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 194 214 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 59 72 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 520 536 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 385 401 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 87 99 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 110 118 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 439 458 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 253 263 - -
Vvi18g1885 690 PRINTS 70kDa heat shock protein signature 416 436 - -
Vvi18g1885 690 Gene3D - 236 417 - -
Vvi18g1885 690 NCBIfam molecular chaperone DnaK 59 655 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vvi18g1885 690 ProSitePatterns Heat shock hsp70 proteins family signature 3. 388 402 IPR018181 -
Vvi18g1885 690 ProSitePatterns Heat shock hsp70 proteins family signature 1. 63 70 IPR018181 -
Vvi18g1885 690 MobiDBLite consensus disorder prediction 657 690 - -
Vvi18g1885 690 ProSitePatterns Heat shock hsp70 proteins family signature 2. 247 260 IPR018181 -
Vvi18g1885 690 Coils Coil 303 330 - -
Vvi18g1885 690 FunFam Molecular chaperone DnaK 61 247 - -
Vvi18g1885 690 CDD HSPA9-Ssq1-like_NBD 58 433 - -
Vvi18g1885 690 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 432 556 IPR029047 -
Vvi18g1885 690 Pfam Hsp70 protein 60 655 IPR013126 GO:0005524|GO:0140662
Vvi18g1885 690 Gene3D - 558 658 IPR029048 -
Vvi18g1885 690 Hamap Chaperone protein DnaK [dnaK]. 57 689 IPR012725 GO:0005524|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1885 Vvi-Chr18 25847222 25853180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1885 60 665 Miscellaneous Gene Families AT5G42020 49.601 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1885 K03283 - vvi:100248235 1292.72