Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1875 ATGCACATGATCAAAACTTGTTTCAAACCGTGTTTGTTTTTGCTGAACAATCTGCTTTACATGTACTGTAAATGTGGTGAAACGGATGTTGCAAAGAAGTTGTTTGATAGAATGCCTAAACGTAATGTTGTTTCTTGGAACTCCTTGATTTCTGGGTATACACAGATGGGTTTCTATCATGAGGTTATGAACCTGTTTAAGGAAGCGAGAATGTCCGATTTAAGGCTTGATAAATTCACTTTCTCAAATGCTTTGAGCGTTTGTGGACGAACTCTGGATTTGAGATTGGGTAGGTTGATACATGCCTTGATTACTGTCAGTGGGTTGGGTGGTCCAGTTCTTTTGACCAATTCACTTATTGATATGTATTGCAAGTGTGGCCGGATTGATTGGGCAAGGCTGGTGTTTGAGAGTGCAGATGAATTAGATTCTGTCTCCTGGAACTCCTTGATTGCAGGTTATGTTCGAATTGGCTCAAATGATGAAATGTTGAGACTTCTTGTGAAAATGCTTCGGCATGGACTGAATTTGAATAGTTATGCATTAGGAAGTGCCCTGAAGGCATGTGGCTCAAACTTTAGTTCTTCAATAGAATGTGGGAAAATGCTTCACGGGTGTGCAGTCAAACTTGGGTTGGATTTGGATGTTGTTGTTGGAACTGCATTGCTTGATACATATGCAAAAATTGGAGATTTAGAAGATGCAACCAAAATTTTCAAGCTCATGCCTGATCCAAATGTTGTCATGTATAATGCCATGATTGCTGGATTCCTGCAAATGGAGACTATGGCTGATGAATTTGCAAATGAAGCCATGTATCTTTTCTTTGAGATGCAAAGTCGAGGAATGAAGCCCTCTGAGTTTACATTCTCGAGCATACTCAAAGCTTGTAGCACCATTGAAGCATTTGAGTGCGGAAAGCAAATTCATGCTCAAATCTTTAAATACAATCTTCAGTCTGATGAGTTCATTGGAAATGCACTTGTTGAGCTGTATTCATTGTCAGGTTCAATTGAGGATGGCCTAAAATGTTTTCATTCAACTCCCAAGCTAGATGTTGTTTCATGGACATCCCTTATTGTGGGTCATGTTCAAAATGGACAATTTGAGGGTGGACTGACTCTGTTCCATGAATTGCTGTTCTCTGGAAGAAAACCGGATGAGTTCACAATATCAATCATGTTGAGTGCTTGTGCAAATTTGGCAGCAGTAAAGTCTGGTGAGCAGATCCATGCCTATGCAATAAAAACTGGAATCGGAAACTTCACCATCATTCAAAATTCACAGATTTGCATGTATGCCAAATGTGGAGACATAGATTCTGCTAATATGACCTTTAAAGAGACAAAGAATCCCGACATAGTGTCATGGTCTGTGATGATTTCTAGCAATGCACAACATGGATGTGCAAAAGAAGCTGTGGACCTCTTTGAATTGATGAAGGGTTCTGGGATTGCACCTAACCACATTACTTTTCTTGGAGTTCTTGTTGCATGTAGTCATGGGGGACTTGTAGAAGAAGGATTACGATATTTTGAAATCATGAAGAAAGATCATGGCATAACGCCAAATGTAAAGCATTCTGCCTGCATTGTGGACCTTCTGGGTCGAGCTGGAAGACTAGCCGAGGCAGAAAGCTTCATTATGGACTCAGGCTTTGAGGGCGATCCAGTAATGTGGCGATCTTTATTGAGTGCTTGCAGGGTCCATAAGGCCACTGACACTGGGAAACGTGTTGCAGAGAGAGTAATTGAGCTTGAACCTGAAGCTGCTGCATCATATGTGCTTCTTTACAACATCTACAATGATGCTGGAATACAAATGCCAGCCACAGAAATCAGGAACTTGATGAAAGATCGAGGAGTTAAAAAAGAACCTGGTCTAAGTTGGATTGAGGTTGGAAACGTGGTTCATTCCTTTGTGGCGGGTGATAGGTCTCACCCTAATAGTCAAGTCATTTATGTGCAATTGGAGGAAATGTTGGAGGAGATAAAGAAATTAGATTATATTGATGAGAAGCTTGTTTCTGATGCCTCAGAACCAAAGCACAAGGACAACTCAATGGTCAGCTACCATAGTGAAAAGTTAGCTGTGACTTTTGGGATAATTAGTTTACCAAGATCAGCTCCTGTGAGAGTAATGAAGAACTTGAGAAGCTGTTGGCATTGTCATGAAACAATGAAGCTCTTCTCAAGGTTGGAAAATAGGGAGATAATTCTTAGGGATCCAATTCGTTTCCATCGCTTCAGAGATGGTTCTTGTTCTTGTGGAGACTACTGGTAA 2283 0.4069 MHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1875 760 Pfam E motif 573 632 IPR046848 -
Vvi18g1875 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 76 IPR002885 -
Vvi18g1875 760 Pfam PPR repeat 44 70 IPR002885 -
Vvi18g1875 760 Pfam PPR repeat 117 137 IPR002885 -
Vvi18g1875 760 Pfam PPR repeat 220 243 IPR002885 -
Vvi18g1875 760 Pfam PPR repeat 16 43 IPR002885 -
Vvi18g1875 760 Pfam PPR repeat 145 175 IPR002885 -
Vvi18g1875 760 NCBIfam pentatricopeptide repeat 455 488 IPR002885 -
Vvi18g1875 760 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Vvi18g1875 760 NCBIfam pentatricopeptide repeat 44 77 IPR002885 -
Vvi18g1875 760 NCBIfam pentatricopeptide repeat 145 178 IPR002885 -
Vvi18g1875 760 NCBIfam pentatricopeptide repeat 16 44 IPR002885 -
Vvi18g1875 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vvi18g1875 760 FunFam Pentatricopeptide repeat-containing protein At3g13880 264 417 - -
Vvi18g1875 760 Gene3D Tetratricopeptide repeat domain 303 421 IPR011990 GO:0005515
Vvi18g1875 760 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 143 697 IPR046960 GO:0003723|GO:0009451
Vvi18g1875 760 Pfam PPR repeat family 452 499 IPR002885 -
Vvi18g1875 760 Pfam PPR repeat family 352 400 IPR002885 -
Vvi18g1875 760 Pfam PPR repeat family 245 297 IPR002885 -
Vvi18g1875 760 Pfam DYW family of nucleic acid deaminases 684 760 IPR032867 GO:0008270
Vvi18g1875 760 FunFam Pentatricopeptide repeat-containing protein At3g13880 98 196 - -
Vvi18g1875 760 Gene3D Tetratricopeptide repeat domain 200 302 IPR011990 GO:0005515
Vvi18g1875 760 Gene3D Tetratricopeptide repeat domain 98 199 IPR011990 GO:0005515
Vvi18g1875 760 Gene3D Tetratricopeptide repeat domain 1 95 IPR011990 GO:0005515
Vvi18g1875 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Vvi18g1875 760 Gene3D Tetratricopeptide repeat domain 423 656 IPR011990 GO:0005515
Vvi18g1875 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vvi18g1875 760 FunFam Pentatricopeptide repeat-containing protein At3g13880 426 675 - -
Vvi18g1875 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vvi18g1875 760 Pfam E+ motif 637 664 IPR046849 -
Vvi18g1875 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 11 41 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1875 Vvi-Chr18 25669617 25672223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1875 2 760 Glycoside Hydrolase AT3G49170 36.658 1.07e-169 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1875 - - vvi:100244885 1524.22