Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1873 ATGGAGTCCCGGGATCGCCCTTCCTCTTCTCGCCGGCCCTCTAAAAGGGTCCGCATTACTGCAACCCTGCCCCATATTCCAGACGAAATCATTCTGGAGATTCTGTGTCTTCTTCCTGTGAAGTCCCTGATGCGGTTCAAATGCGTTTCCAAATCATGGCGTGAGATGATCTCCGATCCCGATTTCGAGAAGAAGCAACTCGCAGTTGCGGCACGAGACTCTGGTGAGGTCTATAACTCGAGGCTTATTATGCATTATCCTTCTATGAAGCTTAAATCTTGCCCTTTATCTTGCCTGTTCTATGAGCCTGTTGGGCATTCTGTGAATCATGAGTATCCGGGTAGCGAATTGGGTGCTATGAATGAGATCATTGGTAGCTATAATGGGTTGGTTTGTTTTTGTATTCGGGATACAGAAAATGATATAATCTTTGTGTGGAATCCATCGACTAGGGAATTTAGAAGATTGCCTCCCATTTCTTTTATGCAGTGTTTTCATTTGGTGGCGTATGGATTTGGGTATGACAGCATTGCCGATGACTATAAGGTTACGAGAGTGGGTTGCTACTGTATTGGGCGCTATTATGAATATCAAGTCAGGGTTTTTTCATTGAGAGGTAATGTTTGGAGAAAAATTGAGAATTTTCCCTGCTATCTTTTCACTGATGAACCAGGGATACATGTGAATGGTTCAATCAATTTCGGGGGAGTTGGGGACAGTGAAAATTACTACTGGAGTGTAGTTGGACTTGATTTAGCAAGTGAATCTTATCGGATGGTGCCGCTGCCTGATTGTGCAGATCCAAATGTGAAACCAATGATTATGGCTTTAGGAGGACGGTTTTGCACTATTTTTGATAATGACGAGGCTGTTGATGTGTGGGTAATGGAGCAATATGGGGTGAAGAAGTCCTGGAATAAATTGGTTACTGTACCTTATTTCCCGGACCCAATGACTGTTGATTGTACAAAGCCAGTGTTCTTTTTGCGAGACGGAGCAATTCTAATGGAATTCTATGGGTTGTTAGTTTTGTACAATATCGATAGAGATGAATCAACGATTCCTACAATCTATGGGACTCGTCATTGTCATGAGGTAGAAGTCTACCTGGAGACCATAGTTTCACCCAATGCCTACTATAGACTGCAAGCTGGCCATCAAAATGGAGGAATAGGAAGACAAGGTATATCCTGA 1194 0.4313 MESRDRPSSSRRPSKRVRITATLPHIPDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAARDSGEVYNSRLIMHYPSMKLKSCPLSCLFYEPVGHSVNHEYPGSELGAMNEIIGSYNGLVCFCIRDTENDIIFVWNPSTREFRRLPPISFMQCFHLVAYGFGYDSIADDYKVTRVGCYCIGRYYEYQVRVFSLRGNVWRKIENFPCYLFTDEPGIHVNGSINFGGVGDSENYYWSVVGLDLASESYRMVPLPDCADPNVKPMIMALGGRFCTIFDNDEAVDVWVMEQYGVKKSWNKLVTVPYFPDPMTVDCTKPVFFLRDGAILMEFYGLLVLYNIDRDESTIPTIYGTRHCHEVEVYLETIVSPNAYYRLQAGHQNGGIGRQGIS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1873 397 NCBIfam F-box protein interaction domain 127 339 IPR017451 -
Vvi18g1873 397 Pfam F-box associated domain 225 314 IPR013187 -
Vvi18g1873 397 SUPERFAMILY Galactose oxidase, central domain 131 351 IPR011043 -
Vvi18g1873 397 ProSiteProfiles F-box domain profile. 20 67 IPR001810 GO:0005515
Vvi18g1873 397 Pfam F-box domain 25 62 IPR001810 GO:0005515
Vvi18g1873 397 SMART fbox_2 26 66 IPR001810 GO:0005515
Vvi18g1873 397 Gene3D - 6 62 - -
Vvi18g1873 397 SUPERFAMILY F-box domain 23 74 IPR036047 GO:0005515
Vvi18g1873 397 PANTHER OS02G0783600 PROTEIN 30 313 - -
Vvi18g1873 397 CDD F-box_AtFBW1-like 26 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1873 Vvi-Chr18 25645391 25647652 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1873 - - vvi:100267195 821.231