Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1872 ATGGATGATGCAATAGTCCTGTATCCAGGTCCAGGCATCGGCCATGTGGTGTCCATGATAGAGCTAGGCAAGCTCATCCTTCACCGTTACTCCCACAGATTCTCCATCATCATTCTCCTCTCTACTGGTCCTTTTGACACCCCGGCCACCACCTCTTACATTGACCGCATCTCCCAAACCAATCCTTCCATCTCTTTCCACCGCTTCCCCTATCTATTGGTTGACACCTCTTCTTCCACTTGCAATATCGTCGCTGTCTTCTCTGAGTTCTTCCGTCTCAGTGCCTCTAATGTCCTCCATTCTCTCCAGCAACTCTCCAAAACTTCCACCGTTCGGGCATTCATCATCGACTACTTTTGCTCTTCAGCTCTTCCTGTTGCTCGTGACCTTGGTATTCCCACTTACCACTTCCTCACCTCCGGTGCTGCTGTTGTTGCCGCTGTCCTTTACTTTCCGACAATTCACAAACAGTATGAGAGCAGCAATAAGAGCTTCAAGGACATGCCCACTACGTTTTTACACTTTCCTGGGTTGCCTCCGCTACAAGCCACTCGAATGCTTGAACCATGGCTCAACCGAGACGACCCCGCCTATGATGATATGCTATACTTCGCAGAGCTTTTGCCAAAATCCGATGGACTTTTGATAAATACTTTCCATGATCTTGAGCCAATAGCTGTTAAGACAATCAGGGGGGGGACATGTGTTCCCAATGGGCCAACTCCGCCAGTTTACTGCATCGGCCCTTTGATTGCGGATACTAGTGAAGATGAAAGCAATATTGCTGGTAGTGTAGCTCGCCATGGTTGCTTGTCCTGGCTTGACACACAGCCAAGTCAGAGTGTTGTCTTCTTGTGCTTCGGGAGCAACGGAACGTTCTCGCCCGCTCAGGTGAAGGAGATAGCTAATGGACTGGAAAGAAGTGGCAAGAGATTCTTGTGGGTGGTGAAGAACCCACCATCCAACGACAAAAGCAAGCAGATTGCAGTGACGGCCGATGTTGATTTGGATGCTCTAATGCCAGAGGGGTTCCTGGAAAGAACCAAGGATTGGGGAATGGTGGTGAAGTCATGGGCGCCGCAGGTAGAGGTGCTGAATCACCCATCGGTGGGAGGATTTGTAACTCATTGCGGGTGGAACTCAGTGTTGGAGGCAGCGGTCGCAGGGGTGCCAATGGTGGCCTGGCCTCTATATGCTGAGCAGCATATGAATAAGGTAGCTCTGGTGGAGGTTATGAAGATGGCCATTAGAGTGGAGCAGAGGGATGAGGATATGTTTGTGAGTGGAGCTGAGGTGGAGAGGAGAGTGAGAGAGTTGATGGAGTGTGAAGAGGGGAGGGAGCTGAGAGAAAGAAGCAGGAAGATGAGAGTGATGGCTTTGGCAGCTTGGAAAGATGGGGGTTCATCCACCACCGCCCTTGCCAAATTGGCTGATGTCTGGAGTCAAGATTGA 1452 0.5055 MDDAIVLYPGPGIGHVVSMIELGKLILHRYSHRFSIIILLSTGPFDTPATTSYIDRISQTNPSISFHRFPYLLVDTSSSTCNIVAVFSEFFRLSASNVLHSLQQLSKTSTVRAFIIDYFCSSALPVARDLGIPTYHFLTSGAAVVAAVLYFPTIHKQYESSNKSFKDMPTTFLHFPGLPPLQATRMLEPWLNRDDPAYDDMLYFAELLPKSDGLLINTFHDLEPIAVKTIRGGTCVPNGPTPPVYCIGPLIADTSEDESNIAGSVARHGCLSWLDTQPSQSVVFLCFGSNGTFSPAQVKEIANGLERSGKRFLWVVKNPPSNDKSKQIAVTADVDLDALMPEGFLERTKDWGMVVKSWAPQVEVLNHPSVGGFVTHCGWNSVLEAAVAGVPMVAWPLYAEQHMNKVALVEVMKMAIRVEQRDEDMFVSGAEVERRVRELMECEEGRELRERSRKMRVMALAAWKDGGSSTTALAKLADVWSQD* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1872 483 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 480 - -
Vvi18g1872 483 CDD GT1_Gtf-like 5 462 IPR002213 GO:0008194
Vvi18g1872 483 Gene3D Glycogen Phosphorylase B; 5 470 - -
Vvi18g1872 483 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 268 410 IPR002213 GO:0008194
Vvi18g1872 483 Gene3D Glycogen Phosphorylase B; 267 464 - -
Vvi18g1872 483 FunFam Glycosyltransferase 268 464 - -
Vvi18g1872 483 FunFam Glycosyltransferase 5 255 - -
Vvi18g1872 483 PANTHER GLYCOSYLTRANSFERASE 5 481 - -
Vvi18g1872 483 ProSitePatterns UDP-glycosyltransferases signature. 358 401 IPR035595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1872 Vvi-Chr18 25604405 25605856 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1872 2 481 Glycosyltransferase AT3G16520 48.240 4.05e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1872 K22845 - vvi:100243118 978.393