Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1844 ATGCTTTCTGGAGTGAGGGGTGCTGCTCCAAGGAAGTGTATCAATGTGCCATTCAGTAGAAACTCTACGCCTACATGGGTTTTTTACCACATCAAGTCCTATAATGGAGGCTCTGAGATTCAGCTCATCCCTGACAAATGCATAGGAACTATTATTGCTTTCTATCTATCTTCTCAAAACTCAAAGCATGATGAAATAGACTTTGAGTTCTCGATCAACAAGTCTAACCAACCCTCCATTTTACAAACAAATGTCTTCACTAGAAGAAAATGA 273 0.3956 MLSGVRGAAPRKCINVPFSRNSTPTWVFYHIKSYNGGSEIQLIPDKCIGTIIAFYLSSQNSKHDEIDFEFSINKSNQPSILQTNVFTRRK* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1844 90 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 39 88 IPR044791 GO:0004553
Vvi18g1844 90 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 87 IPR013320 -
Vvi18g1844 90 Gene3D - 5 90 - -
Vvi18g1844 90 Pfam Glycosyl hydrolases family 16 37 88 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1844 Vvi-Chr18 25267519 25267791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1844 7 87 Glycoside Hydrolase AT5G13870 50.926 4.97e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1844 K08235 - vvi:100232906 122.094