Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1832 ATGGATAGCTGTCTCATCTCGGAGGCTCCAACTTTGGACGACACTGTAGATGGTGCCGTCGACCACAAAGGAGACCCAGCCAAGAGATCCTTCTCAGGTGCCTGGAAATCTGCGTATTTCATCATAGGCATGGCAGTTGTGGACAGGTTTGCTTTCAAAGGTATAGAAACCAACCTTATAAACTACCTCACCGGATGGCTAGGGGAGTCCACCGCCGCTGCAGCTGCCAACGTGAATACATGGTCCGGGACTGCGACTTTATTGCCTCTCTTAGGAGCTGCCATTGCAGACTCTTATCTTGGTCAATATCGCACCATTGTTATTGCTTCTCTTACCTACATCCTGGGACTAGGCTTATTGACTGTGTCTTCTGTGTTTACTTCTGGGAGCTCTTCCAACTGCAAAAACAGCAACAAAACAACGTCCTGCTCTCCTTCTCAGCTCCAAGTAGTCTTCTTCTTTTTCTCATTGTATGTAGTAGCAATTGGGCAAGGTGGGCTCAAGCCTTGCCTCCAAGCATTTGGAGCTGAGCAATTCGACCAACGAGATCAAGAGGAATGCAAAGCCAAAAGCTCATTCTTCAACTGGTGGTTTTTTGGTCTGGCTGGTGGTGTTTCAGTAAGTTACTTGATTATGAGCTACATTGAAGACAACGTTAGTTGGATTCTTGGATTTGGAATCTCTTGCCTTTTCATGGTGTTGGGGCTGCTCATTTTCTTGTTCGGGACTAGGACTTATAGGTATAGTATAAAAAAGAATGAGAGAAGCCCATTTGTGAGAATTGGTCGGGTTTTTGTTGCAGCAGCCAAGAATTGGAAGACAACCCCTCCAGTGGAAGCTACAGAAAACCTTCCCCCTTACCAAGGTTCAAACCAGTTCAAGTTTCTCAACAAGGCATTGCTTCTGCCAGGGGGGTCTGGGGAAAAAGGAAAGGCATGTAGCCTCAGTGATGTTGAAGAAGCAAAGGCAGTACTAAGGCTGTTTCCCATATGGGCCACATGTTTGGGGTATGGTATTGTGCTTGCACAGCCACCCACTTTGTTTACCAAGCAAGGAACTACACTAGATAGATCAATAGGTTCAGGCTTTCACATACCAGCAGCTTCACTTCAATTTTTTAGGGCCCTCACGGTTCTCATCTTCATTCCTATATACGACCGCATATTTGTCCCGATTGCTAGATCTTTAACCAGAAAACCATCTGGCATAACAATGCTTCAGAGAATCGGAATTGGGATATTTTTAATTGCCATTACCATGGTAATTGCAGCCCTAGTTGAGTTGAAACGTCTGAAAACTGCTGAAGAATATGAGCTGCTTGATATGCCAAAGACGACTCTTCCTATGAAGGTGTGGTGGTTGATTCCCCAATTTATTTTCTTAGGAATTTCTGACTCATTCACCAATGTTGGAATTCAGGAGTTTTTCTGTGACCAGATCCCTAGTGAATTGAGGAGTGTTGGCGTGTCCCTCCAACTAAGTATCGTTGGCTTGGGGAGGTTGCTGAGCACCTCTCTGATCTCTGTCATTGGGAAAATAACTAGTGGGGATGGACGAGATAGCTGGTTTAGTGACAATCTCAATCGGGCACATCTTGATTACTTTTATTGGCTACTTGCTGGAGTCACTGCAATAGGATTGGCTGTCTACATGTTTTTCGCCAAGTCTTACATTTATAATAGTACAACATGA 1692 0.448 MDSCLISEAPTLDDTVDGAVDHKGDPAKRSFSGAWKSAYFIIGMAVVDRFAFKGIETNLINYLTGWLGESTAAAAANVNTWSGTATLLPLLGAAIADSYLGQYRTIVIASLTYILGLGLLTVSSVFTSGSSSNCKNSNKTTSCSPSQLQVVFFFFSLYVVAIGQGGLKPCLQAFGAEQFDQRDQEECKAKSSFFNWWFFGLAGGVSVSYLIMSYIEDNVSWILGFGISCLFMVLGLLIFLFGTRTYRYSIKKNERSPFVRIGRVFVAAAKNWKTTPPVEATENLPPYQGSNQFKFLNKALLLPGGSGEKGKACSLSDVEEAKAVLRLFPIWATCLGYGIVLAQPPTLFTKQGTTLDRSIGSGFHIPAASLQFFRALTVLIFIPIYDRIFVPIARSLTRKPSGITMLQRIGIGIFLIAITMVIAALVELKRLKTAEEYELLDMPKTTLPMKVWWLIPQFIFLGISDSFTNVGIQEFFCDQIPSELRSVGVSLQLSIVGLGRLLSTSLISVIGKITSGDGRDSWFSDNLNRAHLDYFYWLLAGVTAIGLAVYMFFAKSYIYNSTT* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1832 563 Pfam POT family 103 515 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1832 563 SUPERFAMILY MFS general substrate transporter 24 555 IPR036259 -
Vvi18g1832 563 Gene3D MFS general substrate transporter like domains 8 563 IPR036259 -
Vvi18g1832 563 CDD MFS_NPF5 35 559 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vvi18g1832 563 FunFam Protein NRT1/ PTR family 5.10 10 563 - -
Vvi18g1832 563 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 33 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1832 Vvi-Chr18 25129362 25133028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1832 20 558 Organic Solute Cotransporters AT1G22540 59.116 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1832 K14638 - vvi:100249450 1095.88