Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1829 ATGGATAACTGTCACATCTCGGAGGCTTCATCTTTGGACGACACTGTAGATGGTGCCGTCGACGACAAAGGCGACCCAGCCAAGAGATCCTTCTCAGGTGCCTGGAAATCTGCGTATTTCATCATAGGCATGGCAGTTGTGGAGAGGTTTGTTTTCAAAGGTATAGAAACCAACCTTATAAACTACCTCACCGGATGGCTAGGGGAGTCCACCGTCGCTGCAGCTGCCAACGTGAATACATGGTCCGGGACTTCGACTTTATTGCCTCTCTTAGGAGCTTCCATTGCAGACTCTTATCTTGGTCAATATCGCACCATTGTTATTGCTTCTGTTACCTACATCCTGGGACTAGGCTTATTGACTCTGTCTGCTGTGCTTACTTCTGGGAGCTCTTCCAACTGCAAAAACAGAAACAAAACAACGTCCTGCTCTCATTCTGAGCTCCAAGTATTCTTCTTCTTTTTCTCATTGTATGTAGTGGCAATTGCGCAAGGTGGGCTCAAGCCTTGCCTCCAAGCATTTGGAGCTGAGCAGTTCGACCAACGAGATCAAGAGGAATGCAAAGCCAAAAGCTCATTCTTCAACTGGTGGTATTTTGGTCTGGCTGGTGGTGCTGCAGTAAGTTACTTGATTATGAGCTACATTGAAGAGAACGTTAGTTGGATTCTTGGATTTGGAATCCTTTGCCTTTTCATGGTGTTGGGGCTGCTCCTTTTCTTGTTCGGGGCTAGGACTTATAGGTATAGTATCAAAAAGGATGAGAGAAGCCCATTTGTGAGAATTGGTCGGGTTTTTGTTGCAGCAGCCAAGAATTGGAAGACAACCCCTCCAGTGGAAGCTACAGAAGAGGCGGCTCAAGAAAACCTTCCCCCTCACCAAGGTTCAAACCAGTTCAAGTTTCTCAACAAGGCATTGCTTCTGCCAGGGGGGTCTGGGGAAAAAGGAAAGGCATGTAGCCTCAGTGATGTTGAAGAAGCAAAGGCAGTACTAAGGCTGTTTCCCATATGGGCCACATGTTTGGGGTATGGTATTGTGCTTGCACAGCCACCCACTTTGTTTACCAAGCAAGGAACTACACTAGATAGATCAATAGGTTCAGGCTTTCACATACCAGCAGCTTCACTTCAATTTTTTAGGGCCCTCACGGTTCTCATCTTCATTCCTATATACGACCGCATATTTGTCCCGATTGCTAGATCTTTAACCAGAAAACCATCTGGCATAACAATGCTTCAGAGAATCGGAACTGGGATATTTTTAATTGCCATTACCATGGTAATTGCAGCCCTAGTTGAGTTGAAACGTCTGAAAACTGCTGAAGAATATGAGCTGGTTGATATGCCAAAGACGACTCTTCCTATGAAGATGCCTAATGAATTGAGGAGTGTTGGCGTGTCCCTCCAACTAAGTATCGTTGGCTTAGGGAGCTTGCTGAGCACCTCTCTGATCTCTGTCATTGGGAAAATAACTAGTGGGGATGGACGAGATAGCTGGTTTAGTGACAATCTCAATCGGGCACATCTTGATTACTTTTATTGGTTACTTGCTGGACTCACTGCAATAGGATTGGCTGTCTACTTGTTTTTCGCCAAGTCTTACATTTATAATAGAAGTACAACATGA 1623 0.4529 MDNCHISEASSLDDTVDGAVDDKGDPAKRSFSGAWKSAYFIIGMAVVERFVFKGIETNLINYLTGWLGESTVAAAANVNTWSGTSTLLPLLGASIADSYLGQYRTIVIASVTYILGLGLLTLSAVLTSGSSSNCKNRNKTTSCSHSELQVFFFFFSLYVVAIAQGGLKPCLQAFGAEQFDQRDQEECKAKSSFFNWWYFGLAGGAAVSYLIMSYIEENVSWILGFGILCLFMVLGLLLFLFGARTYRYSIKKDERSPFVRIGRVFVAAAKNWKTTPPVEATEEAAQENLPPHQGSNQFKFLNKALLLPGGSGEKGKACSLSDVEEAKAVLRLFPIWATCLGYGIVLAQPPTLFTKQGTTLDRSIGSGFHIPAASLQFFRALTVLIFIPIYDRIFVPIARSLTRKPSGITMLQRIGTGIFLIAITMVIAALVELKRLKTAEEYELVDMPKTTLPMKMPNELRSVGVSLQLSIVGLGSLLSTSLISVIGKITSGDGRDSWFSDNLNRAHLDYFYWLLAGLTAIGLAVYLFFAKSYIYNRSTT* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1829 540 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 33 535 - -
Vvi18g1829 540 Pfam POT family 103 472 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1829 540 SUPERFAMILY MFS general substrate transporter 22 531 IPR036259 -
Vvi18g1829 540 Gene3D MFS general substrate transporter like domains 7 540 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1829 Vvi-Chr18 25081486 25084411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1829 20 540 Organic Solute Cotransporters AT1G22540 56.080 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1829 K14638 - vvi:104882759 990.719