Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1828 ATGGCCATCTCGGACATCTCTTTAGACTCCGAGACACCATTCCTTGAGGACGCCGTGGAGGGTGTTGTGGACTACAGAGGTGTTCCAGCCAAGAGATCTAGATCTGGTGGTTGGAGGTCTGCCTCTTTCATCATCGGTGTGGAACTGGCGGAGAGGATTGCTTACTATGGCATATCATTCAATCTTATAAGCTATCTTACGGGGCCACTGGGGCAGTCCATGGCCGTGGCTGCCCAGAACGTTAATACATTTAGCGGGGCTGGGTGTCTACTCCCTTTGCTTGGGGCATTCGTTGCAGATTCCTTTCTGGGTCGATATCGCACTATTGTTATTGCATCTCTTCTCTACATCCTGGGACTAGGCTTGTTAACTCTGTCGGCTATGCTTCCTTCTCTGTTCCCTTCCTTCTGCCAAAACATTGACAATCCTCCCCAGTTCCAAGTAGTCTTATTCTTTTTTTCTCTATATCTAGTAACAGTTGGCCAAAGTGGGCACAAGCCTTGCACCCAGGCTTTTGGAGCTGACCAATTTGATGGACAACATCCAGAGGAGTGCAAAGCTAAAAGCTCGTTCTTCAACTGGTGGTATTTTGCTCTATGCAGTGGTATTTCAGTAGCTTTCTTGATCTTGAGCTACATTCAAGAAAATCTTAACTGGGTTCTTGGATTTGGAATCCCCTGCATTGTCATGGTGGCAGCGCTGCTCCTTTTCTTGCTTGGAACTAAGACTTACCGTTATAGTATCAATACCAATGAGGAAAACCCATTTGTGAGAATTGGCAAGGTGTTTGTTGAGGCAACTAGGAATTGGAGAACCATGCCATCACTGAAAACTGCAGAGGAGGTTGCTGGAGAGACCCTGCCTCACCATGGTTCTCATCAGTTCAATTGTGACAGGTTTCTCAGCAAGGCCTTGCTTACACTAGACTGTTCGAAGGAGGACGGAAAGGCATGTAGCTTCAGTGACGTTGAAGAAGCGAAAGCAGTTCTAAAGCTGTTTCCCATATGGATTACTAGTTTGGTGTTTGGTATCTTGCCAGCACAATTATCCACTTTCTTTACCAAGCAAGGAATTACTATGGATAGATCAACTGGCTTGGGTTTTGACATACCGGCTGCTTCACTTCAATCCTTGAATACCACCACCATTGTCATCTTTATTCCCATATATGACCGCATTTTGGTTCCTATTGCAAGACATTTAACCAGGAAACCTTCTGGCATATCAATGCTTCAGAGAATTGGAACGGGGATGTTTTTATACATCATTTCAATGGTAATTGCAGCATTAATAGAGGTGAAACGGCTCAAGAAAGCTGAAGAACAGGGCCTGGTTGATACACCAAATGTGACCATTCCAATGAGCGTGTGGTGGTTGGTTCCTCAGTATGTATTGTCTGGAGTTGGGGATGCGTTAACCATGGTAGGTTTTCAAGAATTTTTCTATGATCAGGCCCCAAATGAATTAAGGAGTGTTGGTATTGCCCTCTACCTCAGTATTTTTGGGTTAGGGAGCTTCCTGAGCAGCTTTCTCATCTCTGCCATTGATAAAGTAACTGGTGGAGATGGCCATGATAGCTGGTTCAATGATAACCTCAATAAAGCACATCTTGATTACTTTTATTGGCTTCTTGTTGGGCTCGGTCTATTAGGATTGGCTGGCTATGTGTATTTTGCAAAATCTTACATTTATAATAAGAGAGGTATTGCATGA 1713 0.4437 MAISDISLDSETPFLEDAVEGVVDYRGVPAKRSRSGGWRSASFIIGVELAERIAYYGISFNLISYLTGPLGQSMAVAAQNVNTFSGAGCLLPLLGAFVADSFLGRYRTIVIASLLYILGLGLLTLSAMLPSLFPSFCQNIDNPPQFQVVLFFFSLYLVTVGQSGHKPCTQAFGADQFDGQHPEECKAKSSFFNWWYFALCSGISVAFLILSYIQENLNWVLGFGIPCIVMVAALLLFLLGTKTYRYSINTNEENPFVRIGKVFVEATRNWRTMPSLKTAEEVAGETLPHHGSHQFNCDRFLSKALLTLDCSKEDGKACSFSDVEEAKAVLKLFPIWITSLVFGILPAQLSTFFTKQGITMDRSTGLGFDIPAASLQSLNTTTIVIFIPIYDRILVPIARHLTRKPSGISMLQRIGTGMFLYIISMVIAALIEVKRLKKAEEQGLVDTPNVTIPMSVWWLVPQYVLSGVGDALTMVGFQEFFYDQAPNELRSVGIALYLSIFGLGSFLSSFLISAIDKVTGGDGHDSWFNDNLNKAHLDYFYWLLVGLGLLGLAGYVYFAKSYIYNKRGIA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1828 570 FunFam Protein NRT1/ PTR family 5.10 13 569 - -
Vvi18g1828 570 Pfam POT family 106 520 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1828 570 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 36 564 - -
Vvi18g1828 570 SUPERFAMILY MFS general substrate transporter 29 560 IPR036259 -
Vvi18g1828 570 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 95 119 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1828 570 CDD MFS_NPF5 38 564 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vvi18g1828 570 Gene3D MFS general substrate transporter like domains 12 569 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1828 Vvi-Chr18 25056445 25063709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1828 1 566 Organic Solute Cotransporters AT1G22540 60.954 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1828 K14638 - vvi:100852988 1091.26