Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1827 ATGGCTAACATGCTCCAAAGCCTGGAATCTCCCCTCCTGGAAGACACGGTCGATGGCTCCGTTGATCATCAAGGTTATCCGTCCAAGAGATCCATCTCCGGTGGTTGGAGATCTGCAATTTTCATCATAGGTGTTGAAGTTGCGGAGAGGTTTGCTTACTGTGGCATAGGATCCAATCTTATAAACTATCTTACGGGACCTCTGGGGCAGTCCACAGCCATGGCTGCTGCTAACGTGAATACATGGGCCGGGACGGCGACCTTACTACCCCTTTTAGGAGCTTTTGTTGCAGATTCTTACCTTGGTCGATATCGCACCATTGTTCTTGCTTCTCTTCTCTACATCCTGGGGCTGAGCTTGTTAACTTTATCTGCTATGCTTCCTTCCCTCATCGCCTTCCAAAGCCAAAACGTGGACTACTTCACATTATATTCTCCTCCTCAGCTCCAGATAGTATTGTTCTTTTTCTCTCTATACTTAGTAGCAGTTGGGCAAGGGGGTCATAAGCCTTGCACACAGGCTTTTGGAGCTGATCAGTTTGATGGACAAAATCTAGAGGAGTGCAAAGCCAAAAGCTCATTCTTCAACTGGTGGCTTTTTGGTGTATCTACTGGTACTTCAGTAACTTATGTGATTGTCAGTTACATTGAAGAAAACTTTAATTGGGGTCTTGGATTTGGAATTCCCTGCATTGTCATGGTTGCAGCCCTGCTTGTTTTCTTGCTTGGAACTAGAACTTATCGGTTTACAATTAAAAGAAATGGGAAAAGCCCATTTGTGAGAATTGGAAAAGTATTTGTTGAAGCAGCAAGGAATTGGAGGACTACCCCATCATTGAAAGCTATTCAAGAGAGAACTCAAGAAAACTTGCCTCACCATGGTTCTCACAACTTCAAATTTCTCAACAAGGCATTGCTTGTTCCAGCTTGTTTGAAGGGAGATGGAAAGGCGTGTAGCATTACTGATGTTGAAGAAGCTAAGGCAGTACTGAGTCTGTTTCCCATATGGGCTACTAGCTTGGTGTATGGTATTGTGACCGCACAATCATCAACCTTCTTTACCAAACAAGGAATTACTATGGATAGATCCATTGGGTCTGGTTTTCGCATACCTGCTGCTTCACTTCTATCTTTCATCCCCATCACAATTATTCTCTTCATTCCCATATATGACTGTATTTTTGTTCGCATTGCAAGAGCTTTAACCGGGAAACCGTCTGGCATAACAATGCTTCAGAGAAGCGGGATAGGGTTTCTTCTATGTGTCGTTTCAATGGTAACTGCAGCAATAGTCGAGATGAAACGGCTCAAGACAGCTAAGGAATATGGCCTGGTTGATATGCCAAATGTGACGGTCCCAATGAGGGTGTGGTGGTTGATTCCCCAGTACATCTTGTTGGGAATTGCTGATGTTTTCGCAATGGTTGGTCTTCAAGAATTTTTCTATGATCAGATTCCAAATGAATTAAGGAGTGTTGGTCTCTCCCTCTACCTTAGTATTTATGGTGTAGGGAGCTTCCTCAGTGGCTTTCTCATATCTATCATTGAGGAAACAACTGGTGGGGATGGCAAAACTAGCTGGTTCAATAATAATCTGAATCGAGCTCATATTGATAATTTTTATTGGCTGCTTGCTGGGCTCAGTGCAGTAGAATTGGCTGCCTTTTTGTATTTTGCTAAATCTTACGTTTATAATGTAAGGACCTCATGA 1710 0.4316 MANMLQSLESPLLEDTVDGSVDHQGYPSKRSISGGWRSAIFIIGVEVAERFAYCGIGSNLINYLTGPLGQSTAMAAANVNTWAGTATLLPLLGAFVADSYLGRYRTIVLASLLYILGLSLLTLSAMLPSLIAFQSQNVDYFTLYSPPQLQIVLFFFSLYLVAVGQGGHKPCTQAFGADQFDGQNLEECKAKSSFFNWWLFGVSTGTSVTYVIVSYIEENFNWGLGFGIPCIVMVAALLVFLLGTRTYRFTIKRNGKSPFVRIGKVFVEAARNWRTTPSLKAIQERTQENLPHHGSHNFKFLNKALLVPACLKGDGKACSITDVEEAKAVLSLFPIWATSLVYGIVTAQSSTFFTKQGITMDRSIGSGFRIPAASLLSFIPITIILFIPIYDCIFVRIARALTGKPSGITMLQRSGIGFLLCVVSMVTAAIVEMKRLKTAKEYGLVDMPNVTVPMRVWWLIPQYILLGIADVFAMVGLQEFFYDQIPNELRSVGLSLYLSIYGVGSFLSGFLISIIEETTGGDGKTSWFNNNLNRAHIDNFYWLLAGLSAVELAAFLYFAKSYVYNVRTS* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1827 569 CDD MFS_NPF5 36 564 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vvi18g1827 569 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 93 117 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1827 569 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 34 564 - -
Vvi18g1827 569 Gene3D MFS general substrate transporter like domains 10 568 IPR036259 -
Vvi18g1827 569 SUPERFAMILY MFS general substrate transporter 26 560 IPR036259 -
Vvi18g1827 569 FunFam Protein NRT1/ PTR family 5.10 11 569 - -
Vvi18g1827 569 Pfam POT family 104 527 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1827 Vvi-Chr18 25052073 25055356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1827 10 563 Organic Solute Cotransporters AT1G22540 62.455 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1827 K14638 - vvi:104882760 1083.17