Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1825 ATGCCTGAGATAGTTGAAGGCCGGGAATCTCCAGTGCTGGAAGACACAATTGACAGAATGGTCGACCACAAAGGCTGTCCAGCCACGAGATCCAGCTCTGGTGCTTGGAGATCTGCATATTTCATCATAGGTGCTGAAGTTGCAGAGAGAATCGCATACTACGGCATAGGGTCGAATCTTATAAACTATCTCACCGGACCACTGGGCCAGTCCACAGCCATGGCTGCTGCTAACGTGAATACATGGTCCGGGACTGCGACTTTGTTGCCATTGCTAGGAGCATTTGTTGCAGATACTTATCTTGGTCGATATCGCACCATTGTTATTGCTTCTCTTCTCTATATCCTGGGACTAGGCTTGTTAACTCTCTCTGCTGTGCTTCCTTATCTGAGACCTTCTGATTGCCAAAACAGTGACAAAATCACATCATGTTCTCCTCCTCAAATCCCAGTGATCTTCTTTTTCTCTCTATATCTAGTAGCAGTTGGGGAAGGTGGGCACAAGCCTTGCATCCAGGCTTTTGGAGCCGACCAGTTTGATGGAAATAATCCAGAAGAGTGCAAAGCTAAAAGCTCCTTCTTCAATTGGTGGTATTTCAGTCAATGCGCTGGCATAGCTAGGAATTGGCAAACTACTCCAATGATAACTAAGGAAGATGGTGTCCGAGGAACCCTGTTGCAACAAGATCCAAATGTATGTAATGATGGTGGTGTTAAGGAAGCAAAGGCAGTTCTAAGGCTGTTCTCCATATGGGCTACCTGTTTGGTGTATGCTATTGTGTCTGCTCAATCATCAACCTTTTTTACCAAGCAAGGAGCTACCATGGATAGATCAGTTGGATTGGGCTTTGACTTGCCAGCTGCTTCATCTCAATCTTTTATTGGCATCACCATTGTTCTCTTTGTTCCTATATATGACTGTATTTTTGTACCCTCTGCAAGAGCGTTTACCAGGAACCAATCTGGCATAACAATGCTTCAGAGAATTGGAACTGGGATATTTTTGTATGCCGTTTCCATGGTAGTTGCAGCACTAGTTGAGATGAAACGGCTCAAGACAGCTCAAGAATATGGCCTGGTTGATATGCCAAATGCGTTGGTTCCAATGAAGCTCTGGTGGCTACTTCCCCAGTACATCTTATTTGGGATTGCAGATGTGTTTACCATGGTTGGTCTTCAAGAATTTTTTTATGATCAAGTCCCAAATGAATTAAGGAGTGTTGGTCTTTCCCTCTACCTCAGTATATTTGGTGTAGGGAGTTTTCTGAGCAGTCTTCTTATAGCTGTCATTGAGAAAGCAACTGGTGGAGATGGCCAAGATAGCTGGTTCACAGATAACCTTAACAGGGCACATCTTGATTACTTTTATTGGCTACTTGCAGGGCTCAGTACAGTTGAACTAGCTGCTTACTTATATTTTGCGAAATCTTACATTTATGATAGAAGTACATTGATATGA 1458 0.4362 MPEIVEGRESPVLEDTIDRMVDHKGCPATRSSSGAWRSAYFIIGAEVAERIAYYGIGSNLINYLTGPLGQSTAMAAANVNTWSGTATLLPLLGAFVADTYLGRYRTIVIASLLYILGLGLLTLSAVLPYLRPSDCQNSDKITSCSPPQIPVIFFFSLYLVAVGEGGHKPCIQAFGADQFDGNNPEECKAKSSFFNWWYFSQCAGIARNWQTTPMITKEDGVRGTLLQQDPNVCNDGGVKEAKAVLRLFSIWATCLVYAIVSAQSSTFFTKQGATMDRSVGLGFDLPAASSQSFIGITIVLFVPIYDCIFVPSARAFTRNQSGITMLQRIGTGIFLYAVSMVVAALVEMKRLKTAQEYGLVDMPNALVPMKLWWLLPQYILFGIADVFTMVGLQEFFYDQVPNELRSVGLSLYLSIFGVGSFLSSLLIAVIEKATGGDGQDSWFTDNLNRAHLDYFYWLLAGLSTVELAAYLYFAKSYIYDRSTLI* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1825 485 CDD MFS_NPF5 36 479 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vvi18g1825 485 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 93 117 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1825 485 Pfam POT family 229 442 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1825 485 Pfam POT family 104 204 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1825 485 FunFam Os08g0527700 protein 226 484 - -
Vvi18g1825 485 SUPERFAMILY MFS general substrate transporter 26 475 IPR036259 -
Vvi18g1825 485 FunFam Oligopeptide transporter, kidney isoform 10 225 - -
Vvi18g1825 485 Gene3D MFS general substrate transporter like domains 10 220 IPR036259 -
Vvi18g1825 485 Gene3D MFS general substrate transporter like domains 233 469 IPR036259 -
Vvi18g1825 485 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 230 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1825 Vvi-Chr18 25031522 25037554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1825 233 481 Organic Solute Cotransporters AT1G22540 69.076 4.72e-119 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1825 K14638 - vvi:100854586 546.969