Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1824 ATGGCCATGAATGGCTTGCTTGAAGGCCCCCAATCTCCACTTTTGGAAGACACGGTCGTTGGAGCCATAGACAACAAAGGCCGTCCCGCCAGGCGATCCACCTCCGGCCGTTGGAGAGCCGCATGTTTCATCGTAGGCGCTGCAGTTGCGGAGAGATTTGCGTATTTTGGCATAGAGGCGAATCTCATAAACTACCTTACGGGGCAGCTGGGCCAGTCCACCGCCGCGGCTGCCAAGAATGTGAACACCTGGTTCGGGGTCAGCGCTTTGCTGCCATTAGTGGGAGCCTTTGTTGCAGATTGTTATGTGGGTCGATATCGCACCATTGTTGCTGCTTCTCTTCTTTACGTCCTGGGACTGGGTTTGCTAACTCTATCTGCAGTGTATTCTTCTCAAAGCCTTTCTGACTGCCAAAACACTGAGAAAATCATGTCATGTTCACCTTCTCGGCCCCAAGTACTCTTCTTCTTTTTCTCTCTATATCTAGTAGCAGTTGCCGGAGGTGGGCACAAGACCTGCAACCAGGCTTTTGGAGCTGATCAATTTGATGGACAGGATCCGGAGGAATGCAAAGCAAAAAGCTCTTTCTTCAACTGGTGTAGTTTTTGTCTATGCATTGGTCTTTCAGTAAGTATGCTGACCTTGAGCTATATTCAAGACAATCTTAACTGGGTTCTTGGATTTGGAATCCCCCGCATCGCGATGGTTGTGGCTCTACTCCTTTTCCTGCTTGGAACTGATACTTATCGGTATAGTATCAAAAGAGACGAGAAGAGCCCAGTTATGAGAATCTGTAAGGTGTTTGTTGAAGCAGCAAGGAATTGGAGAATAACCCCATCATCAGAAAAATTTATTGAAGAGGGAGCTCCAGGAACCCTGTCTCACCAAGGGTCTCAAGAATTCAAGTTTCTGAACAAGGCCTTGCTTGTGCAAACTTGTTTTGAGGAAGATGGAAAGGCATGCAGCGTCAGTGAAGTTGAGGAAGCAAAATCAGTTCTGAGGCTGTTTCCCATATGGTCTACATGCTTGGTGTATGCTATTGTGTTGGCACAGTCATCTACTTTCTTTACTAAGCAAGGAATGACCATGGATAGATCAGTATGGTCCGGCTTTGACATACCGGCTGCATCACTTCTAGCTTTTATCAGCCTCTCCATTGTCCTCTTTGTTCCAATATACGACCGCATCTTGGTTCCTATTGCAGGAGACTTCACGAGGAAGCCATCTGGCATAACAATGCTACAGAGAATTGGAATAGGGATATTTCTATCTTCCATTTCCTTAGTAATTGCAGCATTAGTTGAGATGAAACGGCTTAAGACAGCTCAAGAGCATGGCCTGATTGATATGCCAAATGCCACGGTTCCAATGAGGGTGTGGTGGTTGGTTCCCCAATACGTCTTATTTGGACTTTCCGAGGTGTTCGCCTTGGTTGGGCTTCAAGAGTTCTTCTATGATCAGGTCCCAAATGAATTAAGGAGTGTAGGTGTCTCCCTCTACCTCAGTATCTTTGGTGTAGGGAGCTTTCTGAGCAGCTTTCTTATCTCTGCCATTGAGAAAGCAACAGGTGAAGATGGCCAAGATGGCTGGTTTAATGATAACCTCAATAGGGCACATCTTAGTTACTTTTATTGGCTACTTTCTGGGCTCAGCATGGTAGGGTTGGCTACCTACTTGCATTTTGCAAAATATTACACTTACAATAAAGGAGGTGTTTCATGA 1722 0.4611 MAMNGLLEGPQSPLLEDTVVGAIDNKGRPARRSTSGRWRAACFIVGAAVAERFAYFGIEANLINYLTGQLGQSTAAAAKNVNTWFGVSALLPLVGAFVADCYVGRYRTIVAASLLYVLGLGLLTLSAVYSSQSLSDCQNTEKIMSCSPSRPQVLFFFFSLYLVAVAGGGHKTCNQAFGADQFDGQDPEECKAKSSFFNWCSFCLCIGLSVSMLTLSYIQDNLNWVLGFGIPRIAMVVALLLFLLGTDTYRYSIKRDEKSPVMRICKVFVEAARNWRITPSSEKFIEEGAPGTLSHQGSQEFKFLNKALLVQTCFEEDGKACSVSEVEEAKSVLRLFPIWSTCLVYAIVLAQSSTFFTKQGMTMDRSVWSGFDIPAASLLAFISLSIVLFVPIYDRILVPIAGDFTRKPSGITMLQRIGIGIFLSSISLVIAALVEMKRLKTAQEHGLIDMPNATVPMRVWWLVPQYVLFGLSEVFALVGLQEFFYDQVPNELRSVGVSLYLSIFGVGSFLSSFLISAIEKATGEDGQDGWFNDNLNRAHLSYFYWLLSGLSMVGLATYLHFAKYYTYNKGGVS* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1824 573 FunFam Protein NRT1/ PTR family 5.10 13 572 - -
Vvi18g1824 573 CDD MFS_NPF5 38 567 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vvi18g1824 573 Pfam POT family 106 530 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1824 573 Gene3D MFS general substrate transporter like domains 13 571 IPR036259 -
Vvi18g1824 573 SUPERFAMILY MFS general substrate transporter 28 563 IPR036259 -
Vvi18g1824 573 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 95 119 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1824 573 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 36 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1824 Vvi-Chr18 25024973 25027422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1824 1 569 Organic Solute Cotransporters AT1G22540 62.390 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1824 K14638 - vvi:100853111 1118.99