Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1823 ATGGTTGATGGCCCTGAATCTCCACTCCTGGAAGACACCGTCGCCGGAGCCGTCGACCACACAGGCCTTCCGGCCAAACGCTCCACCTCTGGTGGTTGGAGCTCCTCATATTTCATCATAGGTACTGAAGTGGCGGAGAGATCAGCCTACTTTGGCATAGAGGCGAACCTCGTAAACTATTTGACTGGGCCACTACGACAGTCCACGGCCATGGCTGCCAAGAACGTAAACACTTGGTTCGGCATCACCACTTTACTGCCATTAGTAGGAGCCTTTGTTGCAGATTCCTATATGGGTCGATATCGCACCATTGTCATCGCTTCTCTTCTCTACATCCTGGGACTGGGCTTGCTAACCATGTCTGCAGTGCTTTCCTCGCACAACCCTTCTGAATGCCAAAATACTCGGAAAATCATGTCGTGTCCCCCTCCTCAGTGTCAAGTAATTTTCCTTTTTCTCTCTCTATATCTGGTTGCAGTTGCAGAAGGTGGGCACAAGCCCTGCACCCAGGCTTTTGGGGCTGATCAATTTGATGGACGAGATTCGGAGGAGGGCAAAGCAAAAAGCTCCTACTTCAACTGGTTAAATTTTTGTGTAGGCATCAGTCTTTCAGTAAGTATGCTAACGTTGAGTTACATTCAAGACAAGCTTAGCTGGGTTCTTGGATTTGGAATCCCCTGCATTCTGATGGTGGTGGCGCTACTTCTTTTCTTGCTTGGAACTAATACTTATCGGTACAGTGTCAAAAGAGCAGATAAGAACCCATTTGTTAGAATCAGTAAGGTGTTTGTTGAAGCAGCTAGGAATTGGAGACTAAACCCATCATCAGAAAAAGCAATTGAAGAGGGAGCTCAAGGAACCCTGTCTCACCAATGCTCTCCCGAATTCAACTTTCTTAACAAGGCCTTGCTAGGGACAAAATTTTCGGAGGAAGATGGAAAGGCGTGTATTGTCAATGAAGTTGAAGAAGCTAAGGCAGTTCTGAGGCTGTTTCCCATATGGTCTACTTGTTTGATTTATGCTATGGTGCTTGCACAGTCATCGACTTTCTTTACTGAGCAAGGAATGACTATGGATAGATCAATTGGGTCGGGTTTTGACATACCATCTTCTTCGCTTAAGTCCTTTCTCACCATCACCGTTGTTCTCTTCATTCCCATATATGACCTTGTCTTTGTTCCCATTGCAACTGTTTTCACTAGAAAACCATCTGGCATAACAATGCTTCAGAGAATCGGAATAGGGATGTTTCTATCCACTATTTCCATAGCAATTGCGGCTCTGGTAGAGATGAAACGACTCAAGATAGCTCAGGAGCATGGCCTGGTTGATATGCCAAATGCCACCGTTCCAATGAGGGTATGGTGGTTAGTTCCCCAATACGTCTTATTTGGACTTTGCAATGTGTTCACCACAATTGGTCTTCAAGAGTTCTTCTATGATCAAGTCCCAAATGAATTGAGAAGTATTGGTGTCTCCCTCTACCTCAGCATCATAGGTGTAGGGAGCTTTCTGAGCAGCTTTCTTATCTATTTCATTGAGAAAGCAACTGGTGGAGATGGCCAAGATAGCTGGTTCAATGATAACCTCAATAAGGCACATCTTGATTACTTTTATTGGCTACTTTCTGGGCTCAATGCAGTAGGATTGGCTACGTATATGCATTTTGCAAAATCTTATGTTTATAATAGAAGGGGTGTACCACCATGA 1710 0.4485 MVDGPESPLLEDTVAGAVDHTGLPAKRSTSGGWSSSYFIIGTEVAERSAYFGIEANLVNYLTGPLRQSTAMAAKNVNTWFGITTLLPLVGAFVADSYMGRYRTIVIASLLYILGLGLLTMSAVLSSHNPSECQNTRKIMSCPPPQCQVIFLFLSLYLVAVAEGGHKPCTQAFGADQFDGRDSEEGKAKSSYFNWLNFCVGISLSVSMLTLSYIQDKLSWVLGFGIPCILMVVALLLFLLGTNTYRYSVKRADKNPFVRISKVFVEAARNWRLNPSSEKAIEEGAQGTLSHQCSPEFNFLNKALLGTKFSEEDGKACIVNEVEEAKAVLRLFPIWSTCLIYAMVLAQSSTFFTEQGMTMDRSIGSGFDIPSSSLKSFLTITVVLFIPIYDLVFVPIATVFTRKPSGITMLQRIGIGMFLSTISIAIAALVEMKRLKIAQEHGLVDMPNATVPMRVWWLVPQYVLFGLCNVFTTIGLQEFFYDQVPNELRSIGVSLYLSIIGVGSFLSSFLIYFIEKATGGDGQDSWFNDNLNKAHLDYFYWLLSGLNAVGLATYMHFAKSYVYNRRGVPP* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1823 569 Pfam POT family 101 524 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1823 569 SUPERFAMILY MFS general substrate transporter 61 558 IPR036259 -
Vvi18g1823 569 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 31 562 - -
Vvi18g1823 569 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 90 114 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1823 569 CDD MFS_NPF5 33 562 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vvi18g1823 569 Gene3D MFS general substrate transporter like domains 7 566 IPR036259 -
Vvi18g1823 569 FunFam Protein NRT1/ PTR family 5.10 8 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1823 Vvi-Chr18 25019005 25022953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1823 2 564 Organic Solute Cotransporters AT1G22540 60.036 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1823 K14638 - vvi:104882761 1130.55