Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1820 ATGACCATAGCTGGAACTCCCGGAGGACCCGAATCTCCGCTGCTGGAAGACATCGTCGATGGCTACACCGATCACAAAGGCCGTCCAGCCAGGAGATCCACCTCAGGCTGTTGGAGATCTGCGTACTTCATCATAGGTGTTGAAGTTGCAGAGAGGTTTGCATACTCTGGCATACAAGCCAATCTTATAAACTATCTTACGGGTCGATTAGGGCTGTCCATGGCCACTGCTGCCGAGAATGTGAATACATGGTCAGGGACAGGGGGTTTACTGCCCTTAGTAGGAGCATTCGTTGCAGATTCTTATCTTGGCCGATATCGAACCATCATTATTGCTTCTTTTCTTTACATCCTGGGACTAGGGTTGTTAACACTGTCTGCTGTGCTTCCGTCTCCCAGCCCTTCTGACTGCCAAAAAAGCAACCAAATCACATCATGTTCTCCTCCTCAGCTCCAAATAATCCTCTTCTTTTTCTCATTGTATTTAGTGGCAGTAGGGCAAGGTGGGCACAAGCCTTGCAACCAGGCATTTGGAGCCGACCAATTTGATGGACGAAATCCAGAGGAATGCAAAGCCAAAAGCTCATTTTTCAACTGGTGGTATTTTGGTCTTTGCTTTGGTACTGTAATAAATTACTCTGTCTTGAGCTACATTCAAGAGAACTTGAATTGGGGTCTTGGATTTGGAATTCCATGCGTTGTCATGATAGCGGCACTGCTCCTTTTCTTGCTTGGGACTAGGACTTATCGATATAGTGTCAAAACGGATGAGAAAAGCCCATTTGTGAGAATTGGTAAGGTGTTTATTGCAGCAGCTAAGAATTGGCGAACAATGCCTTCATTGGTAGCTACAGAAGAGTTAGCTAGAGAAGCCCCACATCACCAGGTTTCTCAACAATTCAAGTGCTTGAACAAGGCGTTGCTTGCACCAGATGGTTCCAAAGGAAATGGAAGGCAGTGTACCATTGATAATGTTGAAGAAGCAAAGGCAGTTTTAAGACTGTTTCCCATATGGACTACTTGTCTGGTGTATGCTATTGCGTTTGCACAGTCATCTACTTTCTTTACCAAGCAAGGAATCACCATGGACAGATCGATTGGATGGGGGATTGACATACCAGCTTCTTCACTTCAAGGCTTTATCGGCCTCTCCATTGTCCTCATTGTCCCCATATATGACCGCATCTTGGTTCCTATTGCAAGAACCTTAACTAGGAAGCCATCTGGCATAACAATGCTTCAGAGGATCGGAACAGGCATGTTTCTGTCCGCCATTTCCATGGTAGTTGCAGCGCTAGTTGAGATGAAACGGCTAAAAACAGCTCAAGAACATGGGCTGGTTGATATGCCAAACGTGACTCTTCCAATGAGTGTATGGTGGTTGCTTCCCCAATACATCTTGTTTGGAGTTTCTGATGTGGTCACCATAGTTGGTCTTCAAGAGTTTTTCTATGATCAAGTCCCAACCGAATTAAGGAGTGTCGGTATCGCCCTCTACCTCAGTATCTTAGGTGTAGGGAACTTCCTGAGCAGCTTTCTTATCTCTGCAATTGAAAAAGCAACTGGTGGAGATGGCCAACATAGCTGGTTCAACGATAATCTCAATCGGGCACATCTCGATAACTATTATTGGGTTCTTGCAGGGCTGAGTGCAGTAGGATTGAGTTTATACCTGTATTTTGCAAAGTCTTACATATACAATAGGGGAAGTACATTATGA 1719 0.4503 MTIAGTPGGPESPLLEDIVDGYTDHKGRPARRSTSGCWRSAYFIIGVEVAERFAYSGIQANLINYLTGRLGLSMATAAENVNTWSGTGGLLPLVGAFVADSYLGRYRTIIIASFLYILGLGLLTLSAVLPSPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQFDGRNPEECKAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLLFLLGTRTYRYSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQVSQQFKCLNKALLAPDGSKGNGRQCTIDNVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGITMDRSIGWGIDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVVTIVGLQEFFYDQVPTELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHSWFNDNLNRAHLDNYYWVLAGLSAVGLSLYLYFAKSYIYNRGSTL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1820 572 CDD MFS_NPF5 38 566 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vvi18g1820 572 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 36 566 - -
Vvi18g1820 572 Gene3D MFS general substrate transporter like domains 13 570 IPR036259 -
Vvi18g1820 572 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 95 119 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1820 572 FunFam Protein NRT1/ PTR family 5.10 13 571 - -
Vvi18g1820 572 SUPERFAMILY MFS general substrate transporter 26 562 IPR036259 -
Vvi18g1820 572 Pfam POT family 106 529 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1820 Vvi-Chr18 24964701 24968411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1820 1 571 Organic Solute Cotransporters AT1G22540 64.623 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1820 K14638 - vvi:100854655 1129.01