Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1817 ATGACCATAGCTGGAACTCCGGGAGGCCCCGAATCTCCGCTGCTGGAAGACACCGTCGATGGCTACACGGATCACAAAGGCCGTCCAGCCAGGAGATCCACCTCAGGCGGTTGGAGATCTGCATACTTCATCATAGGTGTTGAAGTTGCAGAGAGGTTTGCATACTATGGCATACAGGCCAATCTTATAAACTATCTTACGGGTCGATTAGGGCAGTCCATAGCCAGTGCTGCCGAGAATGTGAATACATGGACAGGGACGGGGAGTCTACTGCCATTGGTAGGAGCATTCGTTGCAGATTCTTATCTTGGCCGATACCGAACCATCATTATTGCTTCTCTTCTTTACATCCTGGGACTAGGGTTGTTAACACTGTCTGCTGTGCTTCCTTCTCCCAGCCCTTCTGACTGCAAAGAAAGCAACCAAATCACATCATGTTCTCCTCCTCAGCTCCAAATAATCCTCTTCTTTTTCTCATTATATTTAGTGGCAGTAGGGCAAGGTGGGCACAAGCCTTGCACCCAGGCATTTGGAGCCGACCAATTTGATGGACGAAATCCAGAGGAATGCAAAGCCAAAAGCTCATTTTTCAACTGGTGGTATTTTGGTCTTTGCTTTGGTACTGTAATAACTTACTCTGTCTTGACCTACATTCAAGAGAACTTGAATTGGGGTCTTGGATTTGGAATTCCATGCGTTGTCATGATAGCGGCACTGCTCCTTTTCTTGCTTGGGACTAGGACTTATCGATATAGTGTCAAAAAGGATGAGAGAAGCCCATTTGTGAGAATTGGTAAGGTGTTTATTGCAGCAGCTAAGAATTGGAGAACAATGCCTTCACTGGTAGCTACAGAAGAGTTAGCTAGAGAAGCCCCACATCACCAGCTTTCTCAACAATTCAAGTGCTTGAACAAGGCGTTGCTTGCACCAGATGGTTCCAAAGGAAATGGAAGGCAGTGTACCATTGATGATGTTGAAGAAGCAAAGGCAGTTTTAAGGCTGTTTCCCATATGGGCTACTTGTCTGGTGTATGCTATTGTGTTCGCACAGTCATCTACTTTCTTTACCAAGCAAGGAATCACCATGGACAGATCGATTGGATGGGGAATTGACATACCAGCTTCTTCACTCCAAGCCTTTATCAGCCTCTCCATTGTCCTCATCGTCCCCATATATGACCGCATCTTGGTTCCTATTGCAAGAACCTTAACTAGGAAGCCATCTGGCATAACAATGCTTCAGAGGATCGGAACAGGCATGTTTCTGTCCGCCATATCTATGGTAGTTGCAGCGCTAGTTGAGATGAAACGACTCAAAACCGCTCAAGAACATGGGCTGGTTGATATGCCAAACGTGACCCTTCCAATGAGCGTATGGTGGTTGCTTCCCCAATACATCTTGTTTGGAGTTTCTGATGTGTTCACCATGGTTGGTCTTCAAGAGTTTTTCTATGATCAAGTCCCAATCGAATTAAGGAGTGTTGGTATCGCCCTCTACCTCAGTATCTTAGGTGTAGGGAGCTTCCTGAGCAGCTTTCTTATCTCTGCAATTGAAAAGGCAACCGGTGGAGATGGCCAACATAGCTGA 1587 0.4619 MTIAGTPGGPESPLLEDTVDGYTDHKGRPARRSTSGGWRSAYFIIGVEVAERFAYYGIQANLINYLTGRLGQSIASAAENVNTWTGTGSLLPLVGAFVADSYLGRYRTIIIASLLYILGLGLLTLSAVLPSPSPSDCKESNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCTQAFGADQFDGRNPEECKAKSSFFNWWYFGLCFGTVITYSVLTYIQENLNWGLGFGIPCVVMIAALLLFLLGTRTYRYSVKKDERSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQLSQQFKCLNKALLAPDGSKGNGRQCTIDDVEEAKAVLRLFPIWATCLVYAIVFAQSSTFFTKQGITMDRSIGWGIDIPASSLQAFISLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTMVGLQEFFYDQVPIELRSVGIALYLSILGVGSFLSSFLISAIEKATGGDGQHS* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1817 528 Gene3D MFS general substrate transporter like domains 12 528 IPR036259 -
Vvi18g1817 528 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 95 119 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1817 528 SUPERFAMILY MFS general substrate transporter 26 522 IPR036259 -
Vvi18g1817 528 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 36 521 - -
Vvi18g1817 528 FunFam Protein NRT1/ PTR family 5.10 13 528 - -
Vvi18g1817 528 CDD MFS_NPF5 38 528 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vvi18g1817 528 MobiDBLite consensus disorder prediction 1 35 - -
Vvi18g1817 528 Pfam POT family 106 521 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1817 Vvi-Chr18 24956219 24960094 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1817 1 528 Organic Solute Cotransporters AT1G22540 66.667 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1817 K14638 - vvi:100854725 1031.17