Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1812 ATGGCGGAAGACGGCAAAAAGCCGGTTTCTGAGGAAGCTCAGAAGCCAGTTGCTGAAGCTTCCGTTGTTGAAGAAGTTGTGGCTGTGGCTGAGGTGACAGCGCCGCCGCCTGCGGTTCCGGAAGCGGAGGAAGCGGCGGAGAAGCTGAAGGAGGAGGAGGAGGTGGTGGAGAAGCTGGAGGAGGAGGTGGCGGCGGCTGAGGAGGAGAAGCCCAAGGTGGTGGAGGAAGGGGAGAAGATGACTGAGTCGGTGTCGTTCAAGGAGGAGAGCAACGTTGTAGGTGATCTTCCGGAGAGTCAGAGGAAGGCTCTGGAGGAGCTGAAAGTGCTGGTCCGGGAGGCGCTGGAGAAGCACGAGTTCACCGCTCCCCCTCCTCCACCGCCGCCGCCGGCCAAGGAGGAGGAAAAGGCTCCTGCAACTGAGGAAGAGCCCAAAACCGAGGCACCGGCGGAACCAGCGCCTGAGGTTGTGTGTCCACCACCGGTGGAAGAATCAGAGAAAAAGGAAGAGAAGGAAGAAGAGAAGAAAGAGGAAGAGAAGAAGGAAGAAGAGAAGAAAGAAGAAGAGAAGGTTGCGCCGCCGGAACCAGCTGAGCCAGTGGTAGTTGCTGCGGTGGTGGAGACAGTTACTGCCGTCGTGGTCGACGAGGATGGTACCAAAACCGTTGAAGCAATCGAAGAGACCATCGTGGTCGCACCTCCCGCTCCTCCAGCAGAGGAGGCCGCAGCCGTCGTCGAGGAGGTCACTCCTCCACCTCCGGCCGAGGAAGTGCCCCCGCCGCCACCACCACCGCCGGAGGAGGTAGAGATCTGGGGAATCAAACTCTTCGATGACGACAGGACCGATGTCGTCCTCCTAAAATTCCTCCGTGCCCGAGATTTCAAGCCTAAAGAAGCCTTAACCATGTTGAAGAACACTGTGCTATGGCGAAAAAGCTTTGGAATCGAAACTCTTCTGGGAGATGACCTCGGAACCCACCTGGAGAGCGTGGTGTTCATGGAGGGATCCGGAAAAGAAGGCCACCCAGTGTGCTACAACGCATACGGAAAATTCCTGAACAAGGAACTGTATCAAAACACCTTCTCTGATGAGGAGAAGAGGCAGAACTTCCTCCGATGGCGGATTCAGTTCTTGGAGAAGAGCATAAGGAAGCTGGACTTCAGTCCCAATGGCATCAACACTATCATTCAGGTCAACGATCTCAAGAACTCCCCAGGACCATTCAAGAGGGAGCTCCGACAATCCACCAACCAGGCCCTCCACTTGCTCCAAGACAATTATCCCGAGTTTGTTGCCAAACAGATCTTTATCAATGTTCCATGGTGGTACTTGGCCTTCAATAGAATGATCAGTCCTTTCCTGACTCAAAGGACAAAGAGCAAGTTTGTATTTGCAGGGCCATCAAAATCCGCTGAAACCCTTTTCAAATATATTGCACCTGAGCAAGTCCCAGTGCAATATGGTGGACTGAAAAGGGATGGTGACACTGAATTCTCCATCTGTGACCCTGTTACATTGGTCACCATCAAACCGGGATGCAAACATGTTATTGAATTCCCATACTCTGAGCCATGCCAGCTAATTTGGGAACTTCGCGTTATCGGATGGGATGTGACCTATGGAGCTGAGTTTGTGCCCACTGTCGAGGGGGGGTACACAGTAATCGTCCAGAAAGCAAGGAAAATTGCCCCAACCGATGAACCAGTGATCAGCAACAGCTTCAAAATTGGGGAACCAGGCAAGGTCATTCTCACCATCGACAATCAAACCTCCAAGAAGAAGAAGCTCCTCTACAGGTCCAAGACTCAACCTTGTGACTAA 1821 0.5327 MAEDGKKPVSEEAQKPVAEASVVEEVVAVAEVTAPPPAVPEAEEAAEKLKEEEEVVEKLEEEVAAAEEEKPKVVEEGEKMTESVSFKEESNVVGDLPESQRKALEELKVLVREALEKHEFTAPPPPPPPPAKEEEKAPATEEEPKTEAPAEPAPEVVCPPPVEESEKKEEKEEEKKEEEKKEEEKKEEEKVAPPEPAEPVVVAAVVETVTAVVVDEDGTKTVEAIEETIVVAPPAPPAEEAAAVVEEVTPPPPAEEVPPPPPPPPEEVEIWGIKLFDDDRTDVVLLKFLRARDFKPKEALTMLKNTVLWRKSFGIETLLGDDLGTHLESVVFMEGSGKEGHPVCYNAYGKFLNKELYQNTFSDEEKRQNFLRWRIQFLEKSIRKLDFSPNGINTIIQVNDLKNSPGPFKRELRQSTNQALHLLQDNYPEFVAKQIFINVPWWYLAFNRMISPFLTQRTKSKFVFAGPSKSAETLFKYIAPEQVPVQYGGLKRDGDTEFSICDPVTLVTIKPGCKHVIEFPYSEPCQLIWELRVIGWDVTYGAEFVPTVEGGYTVIVQKARKIAPTDEPVISNSFKIGEPGKVILTIDNQTSKKKKLLYRSKTQPCD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1812 606 MobiDBLite consensus disorder prediction 161 194 - -
Vvi18g1812 606 ProSiteProfiles GOLD domain profile. 497 602 IPR009038 -
Vvi18g1812 606 MobiDBLite consensus disorder prediction 34 100 - -
Vvi18g1812 606 Coils Coil 162 192 - -
Vvi18g1812 606 PANTHER PATELLIN-1 163 604 IPR044834 GO:0008289
Vvi18g1812 606 MobiDBLite consensus disorder prediction 63 85 - -
Vvi18g1812 606 SUPERFAMILY CRAL/TRIO N-terminal domain 86 321 IPR036273 -
Vvi18g1812 606 SMART sec14_4 325 492 IPR001251 -
Vvi18g1812 606 MobiDBLite consensus disorder prediction 134 149 - -
Vvi18g1812 606 Coils Coil 39 76 - -
Vvi18g1812 606 CDD SEC14 327 490 IPR001251 -
Vvi18g1812 606 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 320 495 IPR001251 -
Vvi18g1812 606 SMART CRAL_TRIO_N_2 281 306 IPR011074 -
Vvi18g1812 606 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 506 599 IPR036598 -
Vvi18g1812 606 MobiDBLite consensus disorder prediction 115 198 - -
Vvi18g1812 606 Pfam CRAL/TRIO domain 330 489 IPR001251 -
Vvi18g1812 606 Gene3D GOLD domain 504 602 - -
Vvi18g1812 606 Gene3D - 256 503 IPR036865 -
Vvi18g1812 606 SUPERFAMILY CRAL/TRIO domain 331 491 IPR036865 -
Vvi18g1812 606 Pfam CRAL/TRIO, N-terminal domain 267 305 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1812 Vvi-Chr18 24889622 24892029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1812 285 484 Acyl Lipid Metabolism Gene Families AT1G55840 28.230 5.48e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1812 - K19996 vvi:100246049 734.947