Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1811 ATGGCTGATGAAACCGACGCCGCGCCTCCCCCAACGCTTCTTGCAGCGGCATCGGTGGTGCCACCAGAGACGGCGGCGCCACCCGAGACGGCGGCATCGGAGGAAGTTCTGACTGTGCTGGACGTCGCTCCGCCGGTGACTGAGAAGGAGGTCTCGCCGCAGAAACCGCCTCCTCCGCCCGAGGAGGTGGTGGCTGTGGTCGATTCGGAGAAGAAAGTGCCTCAGAATCTGGTGTCGTTCAAGGAGGAGAGCAACAGACTGGCGGATCTCAGCGAATCGGAGAGAAGGGCGCTGGAGGAGTTGAAGCAGTCGGTGCAAGAAGCCCTCAGAAATGGGATTTTCACTTCACAACCACAGCCGCCACCGCCGCCTCCACCGCCTCAATCAGCAGAAAAACCACCTGAGAAAATCGAAGAAGCTTCTGAAAAAAGGGAACCAAACCCAGTTGCAGAATCGGAGATCAGCACCCAAGAAGAGAGTGCTAAAGATGAAAATGTGAAACCCACACCAAACCCAACAATTGAATCCATTCTCAAGCACGAAAGCCCAACTCAAGAGGATGTGTCCATCTGGGGGATTCCACTGCTGAAAGACGAGAGAAGCGATATGATTCTTCTCAAATTTCTGAGGGCGAGAGAGTTCAAGGTGAAGGAAGCTTTCGCCATGCTAAAAAACACCATCTTTTGGAGGAAAGAGTTTGGCATTGACGCATTGGTGGATGATGATTTGGGTGAGCACTTGGAGAAGGTGGTGTTCATGCATGGTTTTGACAGAGATGGCCACCCAGTGTGTTACAATGTGTATGGGGAGTTTCAGAACAAAGAATTGTACCAGAAGACGTTTTCTGATGAAGAGAAGAGGATGAAGTTCCTGAGATGGAGGATTCAGTTCTTGGAAAGGAGTATCAGGAAGCTTGATTTCACCCCTGGCGGCGTCAACACTATCTTTCAGGTTAATGATCTCAAGAATTCTCCCGGACCCGGAAAATGGGAGCTTAGGCAAGCCACCAAACAGGCCCTCCAGCTGCTGCAGGACAATTACCCTGAATTCGTTGCTAAACAGGTGTTCATCAATGTTCCTTGGTGGTATCTCGCATTCTATATGATGATCAGTCCATTCTTGACTCAGAGGACCAAGAGCAAGTTTGTATTTGCAAGCCCAGCCAAATCTGCCAAAACACTTTTCAAATACATATCTCCTGAGCAAGTGCCAATTCAGTATGGTGGATTGAGTGTGGACTACTGTGATTGCAACCCTGATTTCGGCATTGCTGATCCAGTCACCGAGATTACTGTGAAACCATCAACCAAGCAAACAGTGGAAATATTAGTTTCTGAGCAATGCGTTATTGTATGGGAGGTCAGGGTAGTTGGGTGGGAGGTTGCCTACGGAGCTGAGTTCATTCCTGATGCTGAAGATGAGTATACCGTGGTTGTACAGAAGGCAACAAAGATGGCCCCAACTGATGATCCAGTAATGTGTAACAGTTTCAAAATCAAGGAACTCGGGAAGATAGTGATCACTATTGATAACCCAACATCAAAGAAGAAGAAGCTTCTCTATAGGTTCAAGGTCAAACCCTACTCCAATTGA 1593 0.489 MADETDAAPPPTLLAAASVVPPETAAPPETAASEEVLTVLDVAPPVTEKEVSPQKPPPPPEEVVAVVDSEKKVPQNLVSFKEESNRLADLSESERRALEELKQSVQEALRNGIFTSQPQPPPPPPPPQSAEKPPEKIEEASEKREPNPVAESEISTQEESAKDENVKPTPNPTIESILKHESPTQEDVSIWGIPLLKDERSDMILLKFLRAREFKVKEAFAMLKNTIFWRKEFGIDALVDDDLGEHLEKVVFMHGFDRDGHPVCYNVYGEFQNKELYQKTFSDEEKRMKFLRWRIQFLERSIRKLDFTPGGVNTIFQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYMMISPFLTQRTKSKFVFASPAKSAKTLFKYISPEQVPIQYGGLSVDYCDCNPDFGIADPVTEITVKPSTKQTVEILVSEQCVIVWEVRVVGWEVAYGAEFIPDAEDEYTVVVQKATKMAPTDDPVMCNSFKIKELGKIVITIDNPTSKKKKLLYRFKVKPYSN* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1811 530 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 240 415 IPR001251 -
Vvi18g1811 530 Pfam CRAL/TRIO domain 249 409 IPR001251 -
Vvi18g1811 530 MobiDBLite consensus disorder prediction 116 131 - -
Vvi18g1811 530 Coils Coil 81 111 - -
Vvi18g1811 530 ProSiteProfiles GOLD domain profile. 391 525 IPR009038 -
Vvi18g1811 530 PRINTS Cellular retinaldehyde-binding protein signature 367 386 - -
Vvi18g1811 530 PRINTS Cellular retinaldehyde-binding protein signature 204 226 - -
Vvi18g1811 530 PANTHER PATELLIN-1 56 527 IPR044834 GO:0008289
Vvi18g1811 530 MobiDBLite consensus disorder prediction 42 63 - -
Vvi18g1811 530 SUPERFAMILY CRAL/TRIO domain 250 417 IPR036865 -
Vvi18g1811 530 MobiDBLite consensus disorder prediction 85 103 - -
Vvi18g1811 530 MobiDBLite consensus disorder prediction 83 181 - -
Vvi18g1811 530 SMART sec14_4 245 412 IPR001251 -
Vvi18g1811 530 FunFam SEC14 cytosolic factor family protein 245 425 - -
Vvi18g1811 530 Gene3D - 130 421 IPR036865 -
Vvi18g1811 530 CDD SEC14 247 410 IPR001251 -
Vvi18g1811 530 SUPERFAMILY CRAL/TRIO N-terminal domain 84 242 IPR036273 -
Vvi18g1811 530 Gene3D GOLD domain 422 526 - -
Vvi18g1811 530 MobiDBLite consensus disorder prediction 132 149 - -
Vvi18g1811 530 SMART CRAL_TRIO_N_2 201 226 IPR011074 -
Vvi18g1811 530 Pfam CRAL/TRIO, N-terminal domain 184 225 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1811 Vvi-Chr18 24871503 24873547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1811 205 404 Acyl Lipid Metabolism Gene Families AT1G55840 26.316 7.38e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1811 - - vvi:100247827 975.311