Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1809 | ATGGCTCTCCAAGTTTTCTACCATGTGGATCCAACCGAAGTGAGAAACCAGACAGGGAGTTATGGGAAAGCATTTATGGAGTACGAAAAAGATGTGAGCAAGGAGAATAGAGAGAAGGTAGAGAGGTGGAGAGCAGCCTTGAAAGAAGCAATCAATCTATCTGGATGGCACCTTCATGATCACTTAGAAAAAGTTGATTTGAGTGTCCACTGGAAGGATAAAAGAATGAAGCCACTCTTCACTTTTCACTGTCCTTGGATTAGAGGTGGTGGAGCAAGGCATCTCCTGTCATCTTCACTAGGTGGAAGACACGCCTTCGGAGAAGATTATTGGACTAGAAGCGCTGCTCTACGGAACTTATTATAA | 366 | 0.4399 | MALQVFYHVDPTEVRNQTGSYGKAFMEYEKDVSKENREKVERWRAALKEAINLSGWHLHDHLEKVDLSVHWKDKRMKPLFTFHCPWIRGGGARHLLSSSLGGRHAFGEDYWTRSAALRNLL* | 122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1809 | 121 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 3 | 56 | IPR035897 | - | |
| Vvi18g1809 | 121 | Gene3D | - | 1 | 76 | IPR035897 | - | |
| Vvi18g1809 | 121 | PANTHER | TMV RESISTANCE PROTEIN N-LIKE | 2 | 61 | - | - | |
| Vvi18g1809 | 121 | Pfam | TIR domain | 3 | 60 | IPR000157 | GO:0007165 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1809 | Vvi-Chr18 | 24849486 | 24850906 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1809 | - | - | vvi:104882701 | 91.2781 |