Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1803 ATGATGTCTAAACTCCCCCTCTATTTTATTTTCTTCATCTCATGCTCTCAGCTCTTTTTCTCTTCTTTCTCTTTCTCTAATTCCACCAAACTATGCCCTCATCACCAAACCCTTGCTCTACTCCAACTTAAGAAATCCTTTTCCGTTATTGACAATTCCAGTTTTTGGGGATGCGATTACTATGGTGTCATGGCTTATCCCAAAACAGAGTCTTGGAAGAAGGGTAGTGATTGCTGCTCATGGGATGGAGTGACATGTGATAAGGTGACAGGCCATGTAATTGGGCTGGACCTTAGTTGTAGCTGGCTCTATGGCACCATCCATTCCAATAGTACCCTCTTCCTCTTTCCTCACCTGCGAAGGCTCAACCTTGCTTTTAATGACTTCAATGGATCCTCTATTTCGGCTGGGTTTGGCCGGTTCTCAACCTTGACGCATCTCAACCTCTCCTCCTCTGAATTTTCTGGAAAAATTGCACCAGAAATCTCCCACCTCTCCACCTTGGTCTCACTTGATTTGTCTAGGAATTATGGAGCAAAATTTGCCTCGCATGGCTTCAATTCTCTGGTTCAAAATTTAACCAAGTTGCAGAAGCTTCACCTTGGAGGTATTTCCATCTCTTCAGTTTTTCCTGATTCCTTGCTAAATCAGTCTTCTTTAATATCATTAGATCTCTCTTTGTGTGGATTACATGGGAGATTCCCTGACCATGGCATTCATCTTCCAAAACTCGAGCTTCTCAACTTATGGGGAAATGGTGATCTAAGTGGAAACTTCCCACGATTCAGTGAGAACAATTCCCTTATGGAGTTGGATTTATCAAACACAAATTTCAGTGGAGAGCTTCCAGCTTCAATGGGAAATCTAAAGTTTTTACAGACTTTGGATCTCCACAATTGCAAATTGTCAAGGTCCATCCCTACTTCAATTGGCAATCTAAAGTCTTTACAGACTTTGGATCTCACCTTTTGCGAGTTCTCAGGGTCCATCCCTGCTTCATTAGAGAACCTTACACAAATCACTTCTTTGTACCTCAATGGGAATCATTTTAGTGGTAATATTCCAAATGTTTTTAATAACCTTAGAAATTTAATTTCATTAGTCCTTTCTAGTAACAATTTCAGTGGTCAGCTTCCACCATCAATTGGAAATCTAACCAACCTTAAGTACTTAGACATCTCTAATAATCAGCTAGAAGGTGTCATTTTTTCTCATGTAAATGGGTTTTCAAGTCTATCATTTGTCAATTTAGGGTATAACTTGTTCAACGGGACAATACCATCTTGGTTGTACACTCTACCATCATTAGTTTCTTTAAGTCTTAGTCATAATAAACTTACTGGTCATATTGGTGAAATCCAAATTGCTTCATTGGAGGCAATTAATTTAAGTATGAATCAGTTATATGGGTCAATTCCAAGTTCAATATTTAAGCTTATAAACCTTAGATCTCTTTATCTTTCTTCAAATAACTTGAGTGGCATTTTAGAGACAAGCACATTTGTAAAACTTAGAAATCTTGCTTGGCTTGATCTTTCAAACAACATGCTCTCCTTGACCACCTCTAGTAGTTCCAACTCCATTTTACCCAACATTGTGGGTCTAGACCTTTCAAACAATAAGATAAGTGGAAAATGGACATGGAATATGGGAAAAGATACACTGAAATCCTTGAATCTCTCCTATAACTTGATAAGTGGGTTTGAGCTGCTTCCATGGAAAAAAATACAAATTCTGGATCTTCGTTCCAACTTGCTGCAAGGACCACTTCCAACTCCCCCATATTCTACATTTTTCTTTGCAATCTCCAATAACAAATTGAGTGGAGAAATCTCACCATCGATTTGCAAAGTGCATTCCATCGGAGTTCTTGATTTATCTAATAACAATTTGAGTGGCAGACTTCCACATTGTTTGGGGAATTTTAGCAAAGATCTTTCTGTTTTGAATTTACAAGGGAATCGATTTCATGGCACTATTCCTCAAACATTTTTGAAGGGCAATGTTATCAGGAATCTTGACTTCAATGGTAATCAATTGGAAGGCCTAGTACCCAGATCTTTGATCATTTGTAGAGAACTTGAAGTTCTAGACCTTGGAAATAACAAGATAAATGATACATTTCCCCATTGGTTGGAAACTCTTCCAAAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTTTTCCAAAATCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTCGCAATGATTTCGAGGGTGACTTGCCTGAAATGTATTTGAGAAGTTTGAAAGCAATAATGAATGTAGATGAAGGCAAGATGACAAGAAAATATATGGGGGACCATTATTATCAAGATTCCATAATGGTGACAATCAAGGGGTTGGAGATTGAACTTGTGAAAATCTTGAATACTTTCACAACAATTGATTTATCAAGCAATAAATTCCAAGGAGAGATTCCAGAGTCTATTGGAAATCTTAATTCACTTCGAGAGCTCAATTTGTCTCACAACAACCTTGTTGGACATATCCCATCATCTTTTGGGAATTTGAAGTTGCTTGAATCATTGGACCTCTCTTCAAACAAGCTCATTGGGAGAATTCCTCAAGAATTGACAAGTTTAACATTTCTTGAAGTTTTGAATCTTTCCCAAAACCATCTCACTGGATTTATACCTCGAGGAAATCAGTTTGAGACATTTGGAAATGATTCATACAACGGGAACTCAGGGCTATGTGGATTTCCATTGTCGAAGAAATGTACAACTGATGAAACACTAGAACCTTCAAAAGAAGCGGATGCAGAGTTTGAAAGTGGATTTGATTGGAAAATCACATTGATGGGATATGGATGTGGATTGGTAATCGGGTTGTCTCTTGGGTGTTTCATTTTCTTAACTGGGAAACCTGAATGGTTTGTCCGTATTATTGAAGAGAATTTGCACAATAAGAGTAGAAGGTCTAAAAGGAGCACTCGTAGGCGAAGAGCAAGAAGAAACTAA 3012 0.3808 MMSKLPLYFIFFISCSQLFFSSFSFSNSTKLCPHHQTLALLQLKKSFSVIDNSSFWGCDYYGVMAYPKTESWKKGSDCCSWDGVTCDKVTGHVIGLDLSCSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSISAGFGRFSTLTHLNLSSSEFSGKIAPEISHLSTLVSLDLSRNYGAKFASHGFNSLVQNLTKLQKLHLGGISISSVFPDSLLNQSSLISLDLSLCGLHGRFPDHGIHLPKLELLNLWGNGDLSGNFPRFSENNSLMELDLSNTNFSGELPASMGNLKFLQTLDLHNCKLSRSIPTSIGNLKSLQTLDLTFCEFSGSIPASLENLTQITSLYLNGNHFSGNIPNVFNNLRNLISLVLSSNNFSGQLPPSIGNLTNLKYLDISNNQLEGVIFSHVNGFSSLSFVNLGYNLFNGTIPSWLYTLPSLVSLSLSHNKLTGHIGEIQIASLEAINLSMNQLYGSIPSSIFKLINLRSLYLSSNNLSGILETSTFVKLRNLAWLDLSNNMLSLTTSSSSNSILPNIVGLDLSNNKISGKWTWNMGKDTLKSLNLSYNLISGFELLPWKKIQILDLRSNLLQGPLPTPPYSTFFFAISNNKLSGEISPSICKVHSIGVLDLSNNNLSGRLPHCLGNFSKDLSVLNLQGNRFHGTIPQTFLKGNVIRNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFPHWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAIMNVDEGKMTRKYMGDHYYQDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESIGNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKCTTDETLEPSKEADAEFESGFDWKITLMGYGCGLVIGLSLGCFIFLTGKPEWFVRIIEENLHNKSRRSKRSTRRRRARRN* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1803 1003 Gene3D Ribonuclease Inhibitor 454 593 IPR032675 -
Vvi18g1803 1003 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Vvi18g1803 1003 SUPERFAMILY L domain-like 525 591 - -
Vvi18g1803 1003 PRINTS Leucine-rich repeat signature 388 401 - -
Vvi18g1803 1003 PRINTS Leucine-rich repeat signature 830 843 - -
Vvi18g1803 1003 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 179 432 - -
Vvi18g1803 1003 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 801 924 - -
Vvi18g1803 1003 ProSiteProfiles Leucine-rich repeat profile. 481 502 IPR001611 GO:0005515
Vvi18g1803 1003 Pfam Leucine rich repeat 457 517 IPR001611 GO:0005515
Vvi18g1803 1003 Pfam Leucine rich repeat 672 727 IPR001611 GO:0005515
Vvi18g1803 1003 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Vvi18g1803 1003 Pfam Leucine rich repeat 810 867 IPR001611 GO:0005515
Vvi18g1803 1003 FunFam Cf2-like protein 30 136 - -
Vvi18g1803 1003 SMART LRR_typ_2 479 503 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 504 527 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 618 642 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 830 853 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 289 313 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 854 877 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 433 460 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 878 901 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 116 141 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 361 384 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 193 216 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 337 360 IPR003591 -
Vvi18g1803 1003 SMART LRR_typ_2 385 405 IPR003591 -
Vvi18g1803 1003 Gene3D Ribonuclease Inhibitor 29 134 IPR032675 -
Vvi18g1803 1003 Gene3D Ribonuclease Inhibitor 135 453 IPR032675 -
Vvi18g1803 1003 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 361 925 IPR046956 -
Vvi18g1803 1003 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 642 732 - -
Vvi18g1803 1003 Pfam Leucine Rich repeat 117 135 IPR001611 GO:0005515
Vvi18g1803 1003 SUPERFAMILY L domain-like 218 544 - -
Vvi18g1803 1003 Pfam Leucine rich repeat N-terminal domain 34 87 IPR013210 -
Vvi18g1803 1003 Gene3D Ribonuclease Inhibitor 596 932 IPR032675 -
Vvi18g1803 1003 SUPERFAMILY L domain-like 71 281 - -
Vvi18g1803 1003 ProSiteProfiles Leucine-rich repeat profile. 554 575 IPR001611 GO:0005515
Vvi18g1803 1003 SUPERFAMILY RNI-like 601 898 - -
Vvi18g1803 1003 Pfam Leucine Rich Repeat 292 313 IPR001611 GO:0005515
Vvi18g1803 1003 Pfam Leucine Rich Repeat 315 337 IPR001611 GO:0005515
Vvi18g1803 1003 Pfam Leucine Rich Repeat 881 897 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1803 Vvi-Chr18 24785527 24788538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1803 5 998 Receptor kinase-like Gene Family AT1G47890 37.058 6.54e-174 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1803 - - vri:117905714 1825.45