Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1798 ATGATCACTGAAATGATTCTCAGGGAAGAAGAACCCACTGAAACCAATGTTTCAGTGATCTCCATTGTTGGCATGGGTGGAGTTGGGAAGACCACACTTGCCCTGATGGTGTACAACGATGAGGAAACAGCAAAAAAATTCAGTCTCAAAGCTTGGGTTTGTGTATCAAATCAGTACGATATGGTGAGAATAACAAAGACAATTCTCGAGGCTGTCACTTCCCACAGCAGTAACCTGCAGGATTTTAATCAAATTCAAAGGGCTTTGAGTGAAGCATTGAGAGGAAAAAGGTTTTTGATAGTTTTAGATGATTTGTGGAATGAGGATTATGGTGATTGGAACTGCTTGAGATCTCCCTTTTGGGCCGGAGGAAAAGGGAGCAAAATCATAGTTACAACTCGCTGCAAAGGGGTTGCAACTATGATGGGAGGAGAAAAGAACTTGTATGAGTTAAAGCATTTATCTTATGAAGATTGTTGGCTGGTGTTTGAGAAACATGCTTTTCAGAATAGGAGTATTAACCTCCATCCAAGTTTAGTATTGATTGGCAAGAAAATTGTAGAAAAGTGTGCGGGCTTGCCGTTGGCAGCAAAAGCACTTGGTGGGCTTTTACGAACTAAACTAGAAGAGGAAGAATGGGAAAATATATTGAACAGGAAAGTATGGAATTTACAAGGTGAGAAGTGTGGCAGTATTATCCCTGCGTTGAGATTGAGCTACAATCATCTCCCTTCACATTTGAAGAGGTGTTTTGCTTATTGTGCAATATTCCCAAAGAACTACGAATTTATGGTAAAAGAGTTGATTCTCTTATGGATGGCTGAAGGTTTGATTCAATGTTCTCAAGACATTAATAAGCAAGAAATGGAAGATTTAGGTCATGATTATTTTCGTGAAATGCTGTCAATGTCATTTTTTCAACCATCAAATAGAAATATATCACGATTCGTGATGCATGACTTCATTCATGATCTAGCTCAATTTGTAGCCGGAGAAATATGCTTTCATTTAGAGGATAGGTTGGGGATTGACTGCTCTATTTCTGAAAAGATTCGTTTTTCATCATTCATTCGTTGCTACTTTGATGTCTTCAACAAGTTTGAATTCTTTCATAAGGTTGGACATTTGCACACCTTTATAGCATTACCAGTTTGTTCATCACCGTTTTTGCCCCATTATTTAAGCAATAAGATGCTTCATGAATTGGTGCCAAAACTAGTAACCCTAAGGGTAATCTTACTAGGTTTTGGTAAACTCAAAAATGCAAAGAATGCTAATCTACATCTCAAACACATACTTGAATGGTTGACAGTGAAATGGAGTGCCAAGCTTGATGATTCGCGAAACAAAATGCATGAAATGGATGTCCTTAACTCTCTACAACCCCATTTGAATCTAAAAAAACTTAGCATTATGGAATATGGTGGACTAAAATTACCATGTTGGATAGGGGATTCCTCATTTTGTAAAATGGTGGATGTAACGCTCATTAATTGTAGAAAATGCATATCGCTACCATGCCTTGGACAATTACCATTGCTCAAAAACTTACGGATTGAAGGAATGGAAGAAGTGAAAAAAGTGGGTGTTGAGTTCCTTGGGGGGCCTTCTCTTTCCATCAAAGCTTTCCCATCCTTGGAGTCTTTATCTTTTGTGAATATGCCAAAGTGGGTGAATTGGGAGCACAGTTCTTCATTAGAGTCGTATCCTCATGTTCAACAACTAACAATTCGGAATTGTCCTCAATTGATCAAGAAATTACCCACTCCTCTACCTTCCTTAATAAAGCTTAATATTTGGAAATGCCCACAGTTGGGAATTCCACTTCCAAGTCTTCCATCTCTTCGTAAATTAGATCTACAAGAATGTAATGACTTGGTGGTGAGAAGTGGGATTGACCCCATCTCACTCACCCGCTTTACAATTTATGGAATTTCAGGGTTCAACAGATTACATCAAGGGCTCATGGCCTTCTTACCAGCACTTGAAGTCCTGAGAATTTCAGAATGTGGTGAACTGACATATTTGTCGGATGGATCAAAAAACTTATTGGAGATTATGGATTGTCCACAACTTGTATCCTTGGAAGATGATGAAGAACAAGGGCTGCCTCACAGTCTTCAGTATCTGGAAATAGGGAAGTGTGATAACCTGGAGAAGCTTCCTAATGGATTGCAGAACCTAACATCTCTTGAAGAGTTAAGCATCTGGGCTTGTCCAAAGCTGGTATCATTTCCAAAAATAGATTTCCTCTCAATGCTTAGGCGGCTTATCATCAGAGATTGTGAAGACCTAAAGTCTCTTCCTGATGGGATGATGAGGAATTGTAACAAGAATAGCAGCTTGTGTCTCCTAGAATATTTAGAGATCAGCTTCTGTCCATCTCTCCGATGTTTTCCAGAAGGAGAGTTACCAACTACTCTTAAGGAACTGCATATATGTTACTGCAAAAACCTCGAGTCTCTACCAGATGGAGTGATGAAACATGATTCCAGCCCCCAGCACAATACTAGTGGCCTTCAAGTCTTGCAAATCTGGAGATGTTCATCTCTCAAGTCATTCCCGAGAGGTTGCTTCCCTCCCACCCTGAAGCTACTTCAGATTTGGAGTTGCAGCCAACTGGAGTTGATGATAGAGAAGATGTTTCACGATGATAATTCACTTGAATGTTTGGACGTCAATGTGAATTCAAACTTAAAAAGCTTACCAGACTGCCTCTACAACCTCAGAAGACTTCAGATCAAAAGATGCATGAATCTCAAGTCCCTGCCGCATCAAATGCGAAACCTGACTTCTCTTATGTCTCTTGAGATAGCTGACTGTGGGAATATCCAGACTTCCCTATCTAAGTGGGGCCTTAGCAGACTCACCTCTCTTAAATCATTCTCCATTGCTGGCATATTTCCTGAAGTGGTCTCCTTTTCTAATGATCCGGATCCGTTTCTTCTTCCCTCAACTCTCACCTATCTTTCCATTGAAAGATTCAAAAATCTTGAATCCCTTACCTCCCTGGCTCTCCACACACTCACCTCCCTTCAGCATCTATGGATTTCAGGGTGTCCTAAGCTGCAGTCATTTTTGTCAAGAGAAGGACTTTCTGACACAGTTTCACAGCTATATATCAGAGATTGTCCACTCCTAAGTCAAAGGTGCATAAAGGAGAAAGGAGAAGATTGGCCCATGATTTCCCACATCCCATATGTTGAAATAAACCGCAAGTTCATCTTTGAGCAATAA 3237 0.4007 MITEMILREEEPTETNVSVISIVGMGGVGKTTLALMVYNDEETAKKFSLKAWVCVSNQYDMVRITKTILEAVTSHSSNLQDFNQIQRALSEALRGKRFLIVLDDLWNEDYGDWNCLRSPFWAGGKGSKIIVTTRCKGVATMMGGEKNLYELKHLSYEDCWLVFEKHAFQNRSINLHPSLVLIGKKIVEKCAGLPLAAKALGGLLRTKLEEEEWENILNRKVWNLQGEKCGSIIPALRLSYNHLPSHLKRCFAYCAIFPKNYEFMVKELILLWMAEGLIQCSQDINKQEMEDLGHDYFREMLSMSFFQPSNRNISRFVMHDFIHDLAQFVAGEICFHLEDRLGIDCSISEKIRFSSFIRCYFDVFNKFEFFHKVGHLHTFIALPVCSSPFLPHYLSNKMLHELVPKLVTLRVILLGFGKLKNAKNANLHLKHILEWLTVKWSAKLDDSRNKMHEMDVLNSLQPHLNLKKLSIMEYGGLKLPCWIGDSSFCKMVDVTLINCRKCISLPCLGQLPLLKNLRIEGMEEVKKVGVEFLGGPSLSIKAFPSLESLSFVNMPKWVNWEHSSSLESYPHVQQLTIRNCPQLIKKLPTPLPSLIKLNIWKCPQLGIPLPSLPSLRKLDLQECNDLVVRSGIDPISLTRFTIYGISGFNRLHQGLMAFLPALEVLRISECGELTYLSDGSKNLLEIMDCPQLVSLEDDEEQGLPHSLQYLEIGKCDNLEKLPNGLQNLTSLEELSIWACPKLVSFPKIDFLSMLRRLIIRDCEDLKSLPDGMMRNCNKNSSLCLLEYLEISFCPSLRCFPEGELPTTLKELHICYCKNLESLPDGVMKHDSSPQHNTSGLQVLQIWRCSSLKSFPRGCFPPTLKLLQIWSCSQLELMIEKMFHDDNSLECLDVNVNSNLKSLPDCLYNLRRLQIKRCMNLKSLPHQMRNLTSLMSLEIADCGNIQTSLSKWGLSRLTSLKSFSIAGIFPEVVSFSNDPDPFLLPSTLTYLSIERFKNLESLTSLALHTLTSLQHLWISGCPKLQSFLSREGLSDTVSQLYIRDCPLLSQRCIKEKGEDWPMISHIPYVEINRKFIFEQ* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1798 1078 FunFam Probable disease resistance protein At1g61300 4 147 - -
Vvi18g1798 1078 SUPERFAMILY L domain-like 684 825 - -
Vvi18g1798 1078 Gene3D - 2 149 IPR027417 -
Vvi18g1798 1078 SUPERFAMILY L domain-like 308 679 - -
Vvi18g1798 1078 Gene3D Ribonuclease Inhibitor 392 587 IPR032675 -
Vvi18g1798 1078 Gene3D Ribonuclease Inhibitor 588 748 IPR032675 -
Vvi18g1798 1078 Gene3D Ribonuclease Inhibitor 750 911 IPR032675 -
Vvi18g1798 1078 PANTHER DISEASE RESISTANCE PROTEIN RP 14 602 IPR044974 GO:0006952
Vvi18g1798 1078 SUPERFAMILY L domain-like 781 1060 - -
Vvi18g1798 1078 Gene3D - 234 328 IPR036388 -
Vvi18g1798 1078 Pfam NB-ARC domain 14 241 IPR002182 GO:0043531
Vvi18g1798 1078 PRINTS Disease resistance protein signature 19 34 - -
Vvi18g1798 1078 PRINTS Disease resistance protein signature 610 626 - -
Vvi18g1798 1078 PRINTS Disease resistance protein signature 92 106 - -
Vvi18g1798 1078 PRINTS Disease resistance protein signature 190 204 - -
Vvi18g1798 1078 FunFam Probable disease resistance protein At1g63360 240 328 - -
Vvi18g1798 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 254 IPR027417 -
Vvi18g1798 1078 Gene3D Ribonuclease Inhibitor 913 1068 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1798 Vvi-Chr18 24653528 24657134 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1798 - - vri:117906052 1301.96