Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1792 ATGGCTCCTTCTTCCTCTTCTTCTTCTACTTCTTCTACTTCTTCTTCCACCCATCAATGGAAGTATGATGTCTTCCTTAGTTTCAGAGGCGAAGACACCCGTAAAAGCTTCACTGATCATCTTCACACGGCGCTTTGTCAAAAAGGAATCAACACTTTCATGGATGACCAACTTAGGAGAGGAGAACAAATATCTCCAGCGCTCCTTAACGCCATTGAAGAATCGAGGTTTTCCATCATCATTTTCTCTGACAACTATGCTTCTTCCAGTTGGTGTCTGGACGAGCTAGTAAAGATACTTGACTGCATCAAAGTTATGGGACATAGAGCACTACCAGTTTTCTATAACTTGAATCCCTCCCATGTAAAAAAACAAACAGGGAGTTTTGCAGAGGCATTTGCAAAGCATGAACAAGAATACAGGGAGAAGATGGAGAAAGTGGTCAAGTGGAGAGAAGCATTAACTGAAGTAGCCACAATTTCTGGATGGGATTCACGGGATAGGCATGAATCCAAACTTATTGAGGAAATTGTTAGAGATATTTGGAATAAATTGGTTGGCACATCTCCAAGCTACATGAAGGGCCTAGTTGGGATGGAGTCCCGCCTAGAGGCCATGGATTCCTTATTATCAATGTTTTCAGAACCGGACCGGTGA 657 0.4262 MAPSSSSSSTSSTSSSTHQWKYDVFLSFRGEDTRKSFTDHLHTALCQKGINTFMDDQLRRGEQISPALLNAIEESRFSIIIFSDNYASSSWCLDELVKILDCIKVMGHRALPVFYNLNPSHVKKQTGSFAEAFAKHEQEYREKMEKVVKWREALTEVATISGWDSRDRHESKLIEEIVRDIWNKLVGTSPSYMKGLVGMESRLEAMDSLLSMFSEPDR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1792 218 Pfam TIR domain 21 191 IPR000157 GO:0007165
Vvi18g1792 218 SMART till_3 21 160 IPR000157 GO:0007165
Vvi18g1792 218 Gene3D - 15 189 IPR035897 -
Vvi18g1792 218 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Vvi18g1792 218 PANTHER TMV RESISTANCE PROTEIN N-LIKE 11 170 - -
Vvi18g1792 218 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 187 - -
Vvi18g1792 218 ProSiteProfiles TIR domain profile. 20 185 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1792 Vvi-Chr18 24595027 24596218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1792 24 185 Miscellaneous Gene Families AT4G19920 36.585 4.34e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1792 - - vvi:100855211 421.009