Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1780 ATGAAGAGCGAAACAGGTGAAGATTACAGGACGGAGCTCCTCCATCAGGCGCGGCCGGAGGCTAAGTCATGGCGGCTCAATCTCAGAGAGTTCCGGCTGCCGGAGCGGAGGTCGGCCGACCCGCCTTTCAGTTTGAAAGGCCTTCTTCATCACATGACTCCAAGGAAAAAGGGCAAGGTTGCAGAGTATTACAAGAAGCAGGAAAGGCTCCTTGAAGCATACAATGAGATGGAAACCATTAATTCAATGGGTTGTTTGCCTGGCCGTCTTACTGAGGATGAACTGAAGCAGCTTGAAATGAATGAGAGGATGGCCATTTATGCATCCAACATAGCTAATCTTGTGCTTTTTACTGCAAAAGTTTATGCTTCTTTTGAGAGCAGATCATTGGCGGTTATTGCATCGACTCTCGACTCCTTCTTGGATCTCTTGTCTGGGTTTATTCTCTGGTTCACTGCCCATGCCATGAGAACACCGAACCAGTATCGCTATCCCATTGGAAAGAAGCGGATGCAACCGGTGGGGATCATTGTCTTTGCATCAGTAATGGCAACTCTTGGATTACAGATACTGCTCGAGTCTGTTCGGCAACTCATTTCAGGGTCTCGTTCAAAAATGGATGGTGAGAAGGAAAAATGGATGATTGGGATTATGGTTTCTGTCACAGTAGTGAAGTTTGTGCTCATGGTCTACTGCCGGAGGTTCAAGAACGAAATAGTTAGCGCCTATGCTAAAGACCATTTCTTTGATGTCATCACAAACTCCATCGGTTTAGCAACCGCAGTCCTGGCTGTTCATTTCTACTGGTGGATTGATCCTGTTGGCGCTCTAATAATTGCAGGATATACAATTGGTACCTGGGCGAAGACCGTCATTGAGAATGTGTGGTCACTGATTGGAAGAAGTGCACCACCGGATTTCTTGGCAAAACTAACCTATCTCATATGGAACCACCATGAAGATATCAAGCATATTGACACAGTGAGAGCATATACTTTTGGTTCTCATTACTTTGTGGAGGTAGACATAGTGTTGCCAGAAGACATGTTCCTTGGCCGAGCACATAACATCGGTGAGACTCTCCAAGAGAAGTTAGAGCAACTACCTGAAGTAGAACGTGCATTTGTACATATAGATTTTGAGTTTACTCATAGGCCCGAGCACAAGACAAAGGTATGA 1179 0.4563 MKSETGEDYRTELLHQARPEAKSWRLNLREFRLPERRSADPPFSLKGLLHHMTPRKKGKVAEYYKKQERLLEAYNEMETINSMGCLPGRLTEDELKQLEMNERMAIYASNIANLVLFTAKVYASFESRSLAVIASTLDSFLDLLSGFILWFTAHAMRTPNQYRYPIGKKRMQPVGIIVFASVMATLGLQILLESVRQLISGSRSKMDGEKEKWMIGIMVSVTVVKFVLMVYCRRFKNEIVSAYAKDHFFDVITNSIGLATAVLAVHFYWWIDPVGALIIAGYTIGTWAKTVIENVWSLIGRSAPPDFLAKLTYLIWNHHEDIKHIDTVRAYTFGSHYFVEVDIVLPEDMFLGRAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKTKV* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1780 392 SUPERFAMILY Cation efflux protein transmembrane domain-like 102 300 IPR027469 -
Vvi18g1780 392 Gene3D Cation efflux protein transmembrane domain 103 298 IPR027469 -
Vvi18g1780 392 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 15 389 - -
Vvi18g1780 392 Pfam Dimerisation domain of Zinc Transporter 305 379 IPR027470 -
Vvi18g1780 392 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 302 379 IPR036837 -
Vvi18g1780 392 Gene3D Cation efflux protein, cytoplasmic domain 303 380 IPR036837 -
Vvi18g1780 392 FunFam Metal tolerance protein 11 301 381 - -
Vvi18g1780 392 Pfam Cation efflux family 107 298 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vvi18g1780 392 NCBIfam cation diffusion facilitator family transporter 105 379 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vvi18g1780 392 FunFam Metal tolerance protein 11 105 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1780 Vvi-Chr18 24385916 24389328 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1780 - - vvi:100853409 789.645