Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1769 ATGTCACCATTCACTGGCACATTCAAGCTAACGGTGGACCATGGAAAGACCTATCTACTTCGCATAATCAATGCTGCCTTGCAGGAGCCTCTCTTCTTCTCCATTGCTAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGCCACGAGATTATATCACAATATTTCCTGGCCAAACCTTCGATGTCTTATTAGAAGCTAACCAATGCCCGGATCACTATTACATGGCAGCTAGAACTTATTCCGTTGCCCCGACAGCTAGTAATTTTTTTGATAACACAACCACCACAGCTATTGTACAGTACAGGGGATACTACACTCCATCTTCACCTCCTTCCTTGCCTCATCTTCCTGCATACAATGACACAAATGCATCGGTTCAGGTCATGGCCAGCCTCCGAAGCTTAGCAGATGCGGAACATCCTTGCAATGTCCCATTGAGCATGAGCACTAAACTGTTTTACACTATTTCTATAAACTCGTACCCATGCATTAATAATTCATGTTCAGGGGCCAATGGGACGCGGTCTGCCGCAAGTATAAACAATATAAGCTTCCATACCCCTACAGTTGACATACTGGAAGCTTACTATTATAACATTAGTGGTGTATATGGAGATAAATTTCCTAGCGTTCCACCACTGGTGTTCGATTTTACAGCTAATTATCTTCCATTACTCTATCAGTTACCGAGCGCCGGAACAGAAGTAAGGGTGCTCGAATATAACTCCACAGTGGAGATTGTTTTTCAAGGGACAAACTTGATTGCAGGGGTAACCCACCCCATACATCTCCATGGACACAGTTTCTATGTTGTTGGATGGGGATTTGGGAATTTTGATGAAAATAGGGACCCTTTGCGCTATAATCTGGTGGATCCTCCCCTTCAGAATACCATCTCTGTTCCTAGGAAAGGTTGGGCTACAATCAGATTCAAGGCATCCAACCCTGGAGTGTGGTTCATGCACTGCCATGTAGAACAACATTTGACTTGGGGCATGGAAACTGCATTCCTAGTGAAAAATGGTAAACATCCAGAAGCTCAAATGCTACCTCCTCCATCCGACATGCCGCCATGTTGA 1098 0.4426 MSPFTGTFKLTVDHGKTYLLRIINAALQEPLFFSIAKHKMTVVGTDGSYTKPLPRDYITIFPGQTFDVLLEANQCPDHYYMAARTYSVAPTASNFFDNTTTTAIVQYRGYYTPSSPPSLPHLPAYNDTNASVQVMASLRSLADAEHPCNVPLSMSTKLFYTISINSYPCINNSCSGANGTRSAASINNISFHTPTVDILEAYYYNISGVYGDKFPSVPPLVFDFTANYLPLLYQLPSAGTEVRVLEYNSTVEIVFQGTNLIAGVTHPIHLHGHSFYVVGWGFGNFDENRDPLRYNLVDPPLQNTISVPRKGWATIRFKASNPGVWFMHCHVEQHLTWGMETAFLVKNGKHPEAQMLPPPSDMPPC* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1769 365 ProSitePatterns Multicopper oxidases signature 2. 328 339 IPR002355 GO:0005507
Vvi18g1769 365 ProSitePatterns Multicopper oxidases signature 1. 323 343 IPR033138 -
Vvi18g1769 365 PANTHER MULTI-COPPER OXIDASE 7 353 IPR045087 -
Vvi18g1769 365 SUPERFAMILY Cupredoxins 171 365 IPR008972 -
Vvi18g1769 365 Gene3D - 2 144 IPR008972 -
Vvi18g1769 365 Gene3D - 169 365 IPR008972 -
Vvi18g1769 365 CDD CuRO_3_LCC_plant 209 348 IPR034289 GO:0005507
Vvi18g1769 365 Pfam Multicopper oxidase 237 348 IPR011706 GO:0005507|GO:0016491
Vvi18g1769 365 Pfam Multicopper oxidase 6 109 IPR001117 -
Vvi18g1769 365 SUPERFAMILY Cupredoxins 3 144 IPR008972 -
Vvi18g1769 365 CDD CuRO_2_LCC_plant 5 107 IPR034285 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1769 Vvi-Chr18 24128845 24131119 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1769 K05909 - vvi:100256879 743.036