Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1768 ATGATGTGGCTGATCATGAAGGTTTTCCTCTTGCAAATTTTAGTGTTTCAACTTTTTGGTGGTGACATCCGTTGCCAAGCTTCAATCCGTCGGCATACTTTTGTGTTATTGTTTTGCAGGCATGGCGTGAACATGCCTAGATATCCATGGACAGATGGTCCCGAGTATATCACACAATGCCCAATTCAGCCCGGGTCAAAGTTTAGTCAGAAGATCATCCTTTCCTCTGAGGAAGGCACTTTATGGTGGCATGCTCACAGTGATTGGACCCGAGCCACCGTTCATGGAGCTATAATTGTCTATCCCAAGAATGGAACCAAGTATCCTTTTCACAAACCTAACGCAGAATTTCTCATCATATTAGGACAATGGTGGAAGAGTGATGTGAATGTGGTTCGAGATGATGTGCTTGCAAGCGGAGCTGATGTCAATGCCTCTAATTCTTTATTGATAAATGGACAACCTGGTGATCTACTTCCATGCTCAAAATCAGGCACATTCAAGATAACGGTGGATCATGGAAATACCTATCTACTTCGCATAATCAATGCTGCCTTGCACGAGCCTCTTTTTTTCTCCATTGCCAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACAAAACCATTGACACAAGATTATATCACAATATTTCCTGGCCAAACCTTCGATGTCTTACTAGAAGCTAACCAACGCCCGGATCACTATTACATGGCGGCTATAACTTATTCTGAAGCCCCGACAGGTCTTAATATTTATGATAACACAACCACCACAGCTATTGTACAATACAGGGGATACTACACTCCATCTTCACCTCCCTTCTTGCCTCACTTACCTGCATACAATGACACAAATGCAACGCTTCAGGTTATGGCCAACCTCCGAAGCTTAGTAGATGCGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAACCTATTTTACACCGTTTCTTTAAACTCGTACCCATGCATTAATGATTCATGTTCAGGGGTCAATGGGACACGGTCCGCTTCAAGTATAAACAACATAAGCTTCCATACCCCTACAATTGACATACTGGAAGCTTACTATTATAACATCAGTGGTGTATATGGAGATAAATTTCCTAGCGTTCCACCACAGGTGTTTGATTTTACAGGTGATTATCTTCCATTACTCTATCAGTTGCCGAGCACCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGAGATTGTTTTTCAAGGGACAAACTTGGTTGGAGGGACAACCCACCCTATTCATCTCCATGGACACAGTTTCTATGTTGTTGGGTGGGGACTTGGGAATTTTGATGAAAATAAGGATCCTTTGCGCTACAATCTGGTGGATCCTCCCCATCAGAATACCATCTATGTTCCTAGGAATGGTTGGGCTACAATCAGATTCAAGGCATCCAACCCTGGAGTGTGGTTCATGCATTGCCATATAGAACGCCATCAAAGTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGTAAACACCCAGAAGCTCAAATGTTGCCTCCTCCATCCGACATGCCGCCATGTTGA 1575 0.4368 MMWLIMKVFLLQILVFQLFGGDIRCQASIRRHTFVLLFCRHGVNMPRYPWTDGPEYITQCPIQPGSKFSQKIILSSEEGTLWWHAHSDWTRATVHGAIIVYPKNGTKYPFHKPNAEFLIILGQWWKSDVNVVRDDVLASGADVNASNSLLINGQPGDLLPCSKSGTFKITVDHGNTYLLRIINAALHEPLFFSIAKHKMTVVGTDGSYTKPLTQDYITIFPGQTFDVLLEANQRPDHYYMAAITYSEAPTGLNIYDNTTTTAIVQYRGYYTPSSPPFLPHLPAYNDTNATLQVMANLRSLVDAEHPCNVPLSTSTNLFYTVSLNSYPCINDSCSGVNGTRSASSINNISFHTPTIDILEAYYYNISGVYGDKFPSVPPQVFDFTGDYLPLLYQLPSTGTEVRVLEYNSTVEIVFQGTNLVGGTTHPIHLHGHSFYVVGWGLGNFDENKDPLRYNLVDPPHQNTIYVPRNGWATIRFKASNPGVWFMHCHIERHQSWGMETAFIVKNGKHPEAQMLPPPSDMPPC* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1768 524 Gene3D - 329 524 IPR008972 -
Vvi18g1768 524 CDD CuRO_2_LCC_plant 119 266 IPR034285 -
Vvi18g1768 524 SUPERFAMILY Cupredoxins 110 303 IPR008972 -
Vvi18g1768 524 Gene3D - 23 113 IPR008972 -
Vvi18g1768 524 Pfam Multicopper oxidase 41 104 IPR011707 GO:0005507
Vvi18g1768 524 Pfam Multicopper oxidase 117 268 IPR001117 -
Vvi18g1768 524 SUPERFAMILY Cupredoxins 41 126 IPR008972 -
Vvi18g1768 524 NCBIfam laccase 39 524 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1768 524 CDD CuRO_3_LCC_plant 368 507 IPR034289 GO:0005507
Vvi18g1768 524 ProSitePatterns Multicopper oxidases signature 1. 482 502 IPR033138 -
Vvi18g1768 524 Gene3D - 114 303 IPR008972 -
Vvi18g1768 524 Pfam Multicopper oxidase 395 507 IPR011706 GO:0005507|GO:0016491
Vvi18g1768 524 PANTHER MULTI-COPPER OXIDASE 41 512 IPR045087 -
Vvi18g1768 524 SUPERFAMILY Cupredoxins 335 524 IPR008972 -
Vvi18g1768 524 ProSitePatterns Multicopper oxidases signature 2. 487 498 IPR002355 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1768 Vvi-Chr18 24119019 24121773 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1768 K05909 - vvi:109121570 1065.83