Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1756 ATGAAGGTTTTCCTCTTGCAAATTTTAGTGTTTCAACTTTTTGGTGGTGACATCCATTGCCAAGCTTCAACCCGTCGGCATACTTTTGTGGTGAGGGAAGCTTCATATACAAGACTTTGTAGCACCAAGGACATCTTAACAGTAAATGGACAATTTCCGGGACCAACTATACATGCTATGAAAGGAGAGACAATCATTGTCGACGTTTATAACAGGGGAAAAGAAAACATCACCATTCACTGGCATGGGGTGAACATGCCTAGATATCCATGGACAGATGGTCCTGAGTATATCACACAATGCCCAATTCAGCCAGGGTCAAAGTTTAGTCAGAAGATCATCCTTTCCTCTGAGGAAGGCACTTTATGGTGGCATGCTCACAGTGATTGGACCCGAGCCACCGTTCATGGAGCTATAATCATCTATCCCAAGAATGGAACCAAGTATCCTTTTCACAAACCTAACGCGGAATCTCTCATCATATTAGGACAATGGTGGAAGAGTGATGTGAATGCGGTTCGAGATGAAGTGCTTGCAGTCGGAGCTGATGGCAATGCCTCTAATTCTTTATTGATAAATGGACAACCTGGTGATCTACTTCCATGCTCAAAATCAAACACATTCAAGCTAACGGTGGATCATGGAAAGACCTATCTACTTCGCATAATCAATGCTGCCTTGCACGAGCCTCTCTTCTTCTCCATTGCCAAGCATAAAATGATAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACAAGATTATATCACAATATTTCCTGGCCAAACCTTCGATGTCTTACTAGAAGCTAACCAACGTTCGGATCACTATTACATGGCGGCTATAACTTATTCCGAAGCCCCAACAGGTCTTAATATTTATGATAACACAACCACCACAGCTATTGTACAATACAAGGGAAACTACACTCCATCTTCACCTCCCTTCTTGCCTCATTTACCTGCATACAATGACACAAATGCAACGCTTCAGGTCATGGCCAACCTCCGAAGCTTAGTAGATGCGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAACCTGTTTTACACCGTTTCTTTAAACTCGTACCCATGCGTCAATGATTCATGTTTAGGGGCCAATGGGACGCGAACCGTCTCAAGTATAAACAACATAAGCTTCCATACCCCTACAATTGACATACTAGAAGCTTACTATTATAACATCACTGGTGTATATGGAGATAAATTTCCTAGCTTTCCACCACTAGTGTTCAATTTTACATATGATTATCTTCCATTAGTCTATCAATTGCCAAGCACCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGAGATTGTTTTTCAAGGGACAAACTTGGTTGGAGGGACAACCCACCCCATGCATCTCCATGGACAGAGTTTCTATGTTGTTGGATGGGGATTTGGGAATTTCGATGAAAATAGGGATCCTTTGCGCTACAATCTGGTGGATCCTCCCCATCAGAATACCATCTATGTTCCTAGGAATGGTTGGGCTACAATCAGATTCGAGGCATCCAACCCTGGTATGTTGCAAGCACTCATGTCCTTTATTAGAAAAAGAAAAAAAAACCCTTGA 1620 0.4278 MKVFLLQILVFQLFGGDIHCQASTRRHTFVVREASYTRLCSTKDILTVNGQFPGPTIHAMKGETIIVDVYNRGKENITIHWHGVNMPRYPWTDGPEYITQCPIQPGSKFSQKIILSSEEGTLWWHAHSDWTRATVHGAIIIYPKNGTKYPFHKPNAESLIILGQWWKSDVNAVRDEVLAVGADGNASNSLLINGQPGDLLPCSKSNTFKLTVDHGKTYLLRIINAALHEPLFFSIAKHKMIVVGTDGSYTKPLTQDYITIFPGQTFDVLLEANQRSDHYYMAAITYSEAPTGLNIYDNTTTTAIVQYKGNYTPSSPPFLPHLPAYNDTNATLQVMANLRSLVDAEHPCNVPLSTSTNLFYTVSLNSYPCVNDSCLGANGTRTVSSINNISFHTPTIDILEAYYYNITGVYGDKFPSFPPLVFNFTYDYLPLVYQLPSTGTEVRVLEYNSTVEIVFQGTNLVGGTTHPMHLHGQSFYVVGWGFGNFDENRDPLRYNLVDPPHQNTIYVPRNGWATIRFEASNPGMLQALMSFIRKRKKNP* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1756 539 SUPERFAMILY Cupredoxins 20 167 IPR008972 -
Vvi18g1756 539 Gene3D - 15 143 IPR008972 -
Vvi18g1756 539 SUPERFAMILY Cupredoxins 376 524 IPR008972 -
Vvi18g1756 539 Pfam Multicopper oxidase 159 310 IPR001117 -
Vvi18g1756 539 Pfam Multicopper oxidase 31 145 IPR011707 GO:0005507
Vvi18g1756 539 Pfam Multicopper oxidase 438 524 IPR011706 GO:0005507|GO:0016491
Vvi18g1756 539 CDD CuRO_1_LCC_plant 27 143 IPR034288 GO:0005507
Vvi18g1756 539 NCBIfam laccase 22 524 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1756 539 SUPERFAMILY Cupredoxins 151 344 IPR008972 -
Vvi18g1756 539 Gene3D - 153 344 IPR008972 -
Vvi18g1756 539 Gene3D - 371 526 IPR008972 -
Vvi18g1756 539 CDD CuRO_2_LCC_plant 160 307 IPR034285 -
Vvi18g1756 539 PANTHER MULTI-COPPER OXIDASE 32 525 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1756 Vvi-Chr18 23870777 23873297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1756 K05909 - vvi:100855386 1087.4