Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1745 ATGCTTGGGGTTAACTGTTTGTTCGGCCAGAAAGAACTTGTTCAACAATCAGAAAGAGTCAAATCTGTGGATCTACATCCTAAGGAACCATGGATTCTAGCAAGTTTGTATTCAGGAACTGTGTGTATCTGGAACTACCACTCTCAGGAACTTGTAAAATCTTTCAAGGTCGCGGAATCACCAGTTCGATCAGCAAAATTTATAGCATGCAAGCAATGGGTTGTTACTGGGGCTGATGACAAGTTTATCCGCGTCTTCAACTACAATACAATGGAGAAGATTGCAGAATTTGAGGCTCATACTGATTTCATTAGGAGTGTTGCAGTCCATCCTACCCTTCCATGTGTGCTGTCAGCTTCTGATGACATGCTCATAAAGCTTTGGGATTGGGAGAAGGGCTGGGAGTGCACTCAAACGTTCCAGGGACATGCCCACTATGTGATGCAAGTGGCATTTAGTCCCAAAGACGTAAACACTTTCGCAAGTGCATCTCTTGATGGCACCATAAAGGTTTGGAATCTCAGCTCTCCTGCTCCAGACTTTACACTGGATGGGCATTCAAAAGGAGTGAATTGTATTGATTACTTCATGAGAGGCTCTAAACCATATCTGATCTCGGGTTCGGATGACCACACTGCTAAGGTGTGGGATTATGAAGCCAAAAGCTGTGTACAAACACTGGAAGGCCACACAAATAATGTTTCTGCAGTGTGTGTTCACCCTGAACTTCCCCTCATCATTACAGGTTCTGAGGATGGGAACGTTCACATATGGGATCGAGCTACTTACAGGCTTGAGAACACCCAGAGCTATGGTCTTGAAAGAGTTTGGGCTTTTGGGTGCACGAAAGAATCAAACAGGGTTGTGATTGGCTATGACAAAGGAACCATTATGATAAAAGTTCTCAGTTCTCACAGTGGGGGTTCCATGGGCATACGGGTTGAGGAGGAAGAGAAGAAGGAATGTTGA 969 0.4458 MLGVNCLFGQKELVQQSERVKSVDLHPKEPWILASLYSGTVCIWNYHSQELVKSFKVAESPVRSAKFIACKQWVVTGADDKFIRVFNYNTMEKIAEFEAHTDFIRSVAVHPTLPCVLSASDDMLIKLWDWEKGWECTQTFQGHAHYVMQVAFSPKDVNTFASASLDGTIKVWNLSSPAPDFTLDGHSKGVNCIDYFMRGSKPYLISGSDDHTAKVWDYEAKSCVQTLEGHTNNVSAVCVHPELPLIITGSEDGNVHIWDRATYRLENTQSYGLERVWAFGCTKESNRVVIGYDKGTIMIKVLSSHSGGSMGIRVEEEEKKEC* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1745 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 129 - -
Vvi18g1745 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 176 IPR001680 GO:0005515
Vvi18g1745 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 219 - -
Vvi18g1745 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 226 IPR001680 GO:0005515
Vvi18g1745 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Vvi18g1745 322 SUPERFAMILY WD40 repeat-like 12 299 IPR036322 GO:0005515
Vvi18g1745 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 129 IPR001680 GO:0005515
Vvi18g1745 322 Gene3D - 13 302 IPR015943 GO:0005515
Vvi18g1745 322 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Vvi18g1745 322 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Vvi18g1745 322 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Vvi18g1745 322 PANTHER COATOMER 10 311 - -
Vvi18g1745 322 FunFam Uncharacterized protein 13 302 - -
Vvi18g1745 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 176 - -
Vvi18g1745 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 259 - -
Vvi18g1745 322 Pfam WD domain, G-beta repeat 93 129 IPR001680 GO:0005515
Vvi18g1745 322 Pfam WD domain, G-beta repeat 222 259 IPR001680 GO:0005515
Vvi18g1745 322 Pfam WD domain, G-beta repeat 18 45 IPR001680 GO:0005515
Vvi18g1745 322 Pfam WD domain, G-beta repeat 134 173 IPR001680 GO:0005515
Vvi18g1745 322 Pfam WD domain, G-beta repeat 51 87 IPR001680 GO:0005515
Vvi18g1745 322 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Vvi18g1745 322 CDD WD40 19 299 - -
Vvi18g1745 322 SMART WD40_4 220 259 IPR001680 GO:0005515
Vvi18g1745 322 SMART WD40_4 10 45 IPR001680 GO:0005515
Vvi18g1745 322 SMART WD40_4 176 217 IPR001680 GO:0005515
Vvi18g1745 322 SMART WD40_4 48 87 IPR001680 GO:0005515
Vvi18g1745 322 SMART WD40_4 90 129 IPR001680 GO:0005515
Vvi18g1745 322 SMART WD40_4 133 173 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1745 Vvi-Chr18 23559862 23561716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1745 74 265 Miscellaneous Gene Families AT5G08390 30.208 3.21e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1745 K17302 - vvi:100261402 652.899