Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1744 ATGATTATTTTATGTATTTATAATATTTTAAATATCTATAAAGAACTTGTTCAACAATCGGAAAGCGTAAAATCTGTGGATCTACATCCAAAGGAACCATGGATTCTAGCAAGTTTGTATTCAGGAACTGTGTATATCTGGAACTACCATTCACAGGAACTTTTAAAGTCTTTCAAGGTCGCCGAATCACCAGTTCGGTCAGCCAAGTTTATAGCATGCAAACAATGGATTGTTACTGGGGCTGATGACAAGTTTATCCGAGTCTTCGACTACAATACAATGGAGAAGATTGCAGAATTTGAGTCTCATACTGATTTCATTAGGAGTGTTGCAGTCCATCCTACCCTTCCATATGTGCTGTCAGCTTCTGATGACATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGAGTGTACTCAAACGTTCCAGGGACATGCCCACTATGTGATGCAAGTGGCATTTAGTCCCAAAGACGCAAACACTTTTGCAAGTGCTTCTCTTGATGGCACCATAAAGATTTGGAATCTCAGCTCACCTGCGCCAGACTTTACACTGGATGGGCATTCAAAAGGAGTGAATTGCATTGATTACTTCATGAGAGGCTCGAAACCATATCTGATCTCGGGTTCGGATGACCACACTGCTAAGGTGTGGGATTATGAAGCCAAGAGTTGTGTACAAACACTGGAAGGCCACACAAATAATGTTTCTGCAGTGTGTGTTCACTCTGAACTTCCCCTCATCATTACAGGTTCTGAGGATGGAAATGTTCACATATGGGATGGAGCTACTTACAGGCTGGAGAACACCCTGAACTATGGTTTTGAAAGAGTTTGGGCTTTTGGGTGCATGAAAGGATCAAACAGGATTCTAGCAAGTTTGTATTCAGGAACTGTGTGTATCTGGAACTACCACTCGCAGGAACTTGTAAAGTCTTTCAAGGTCGCGGAATCACCAGTTCGCTCAGCAAAGTTTATAGCATGCAAACAATGGGTTGTTACTGGGGCTGATGACAAGTTTATCCGCATCTTCGACTACAATACAATGGAGAAGATTGCAGAATTTGAGGCTCATACTGATTTCATTAGGAGTGTTGCAGTCCATCCTACCCTTCCATATGTGCTGTCAGCTTCTGATGACATGCTAATAAAGCTTTGGGATTGGGAGAAGGGTTGGGAGTGCACTCAAACGTTCAAGGGACATGCCCACTATGTGATGCAAGTGGCATTTAGTCCCAAAGACGCACACACTTTTGCAAGTGCGTCGCTTGATGGCACCATAAAGGTTTGGAATCTCAGCTCACCTGCTCCAGACTTTACACTGGATGGGCATTCAAAAGGAGTGAATTGTATTGATTACTTCATGAGAGGCTCTAAACCATATCTGATCTCCGGTTCGGATGACCATACTGCTAAGGTTTGGGATTATCAAGCCAAGAGTTGTGTACAAACACTGGAAGGACACACAAATAATGTTTCTGCAGTGTGTGTTCACCCTGAACTTCCCCTCATCATTACAGGTTCTGAGGATGGGAACGTTCACATATGGGATGGAGCTACTTACAGGCTTGGGAACACACTGAACTATGGTTTTGAAAGAGTTTGGGCTTTTGGGTGCATGAAAGGCTCAAACAGGGTTGTGATTGGCTATGACAAAGGAACCATTATGATAAAAGTTCTCAGTTCTCACAGTGGGGGTTCCATGGGCATCCGGGTTGAGGAGCAAGAGAAGAAGGAATGTTGA 1746 0.4341 MIILCIYNILNIYKELVQQSESVKSVDLHPKEPWILASLYSGTVYIWNYHSQELLKSFKVAESPVRSAKFIACKQWIVTGADDKFIRVFDYNTMEKIAEFESHTDFIRSVAVHPTLPYVLSASDDMLIKLWDWEKGWECTQTFQGHAHYVMQVAFSPKDANTFASASLDGTIKIWNLSSPAPDFTLDGHSKGVNCIDYFMRGSKPYLISGSDDHTAKVWDYEAKSCVQTLEGHTNNVSAVCVHSELPLIITGSEDGNVHIWDGATYRLENTLNYGFERVWAFGCMKGSNRILASLYSGTVCIWNYHSQELVKSFKVAESPVRSAKFIACKQWVVTGADDKFIRIFDYNTMEKIAEFEAHTDFIRSVAVHPTLPYVLSASDDMLIKLWDWEKGWECTQTFKGHAHYVMQVAFSPKDAHTFASASLDGTIKVWNLSSPAPDFTLDGHSKGVNCIDYFMRGSKPYLISGSDDHTAKVWDYQAKSCVQTLEGHTNNVSAVCVHPELPLIITGSEDGNVHIWDGATYRLGNTLNYGFERVWAFGCMKGSNRVVIGYDKGTIMIKVLSSHSGGSMGIRVEEQEKKEC* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1744 581 CDD WD40 22 304 - -
Vvi18g1744 581 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Vvi18g1744 581 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Vvi18g1744 581 PRINTS G protein beta WD-40 repeat signature 463 477 IPR020472 -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 222 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 57 IPR001680 GO:0005515
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 485 IPR001680 GO:0005515
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 435 IPR001680 GO:0005515
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 262 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 132 - -
Vvi18g1744 581 Pfam WD domain, G-beta repeat 21 48 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 137 176 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 481 518 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 96 132 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 310 346 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 440 476 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 184 220 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 53 90 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 225 262 IPR001680 GO:0005515
Vvi18g1744 581 Pfam WD domain, G-beta repeat 393 432 IPR001680 GO:0005515
Vvi18g1744 581 Gene3D - 288 561 IPR015943 GO:0005515
Vvi18g1744 581 Gene3D - 16 287 IPR015943 GO:0005515
Vvi18g1744 581 SMART WD40_4 93 132 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 479 518 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 392 432 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 435 476 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 349 388 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 9 48 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 51 90 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 307 346 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 179 220 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 223 262 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 265 304 IPR001680 GO:0005515
Vvi18g1744 581 SMART WD40_4 136 176 IPR001680 GO:0005515
Vvi18g1744 581 SUPERFAMILY WD40 repeat-like 278 558 IPR036322 GO:0005515
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 442 476 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 518 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 262 IPR001680 GO:0005515
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 518 IPR001680 GO:0005515
Vvi18g1744 581 PANTHER COATOMER 10 292 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 132 IPR001680 GO:0005515
Vvi18g1744 581 FunFam Uncharacterized protein 292 561 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 179 IPR001680 GO:0005515
Vvi18g1744 581 SUPERFAMILY WD40 repeat-like 13 292 IPR036322 GO:0005515
Vvi18g1744 581 FunFam Uncharacterized protein 16 291 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 435 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 229 IPR001680 GO:0005515
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 179 - -
Vvi18g1744 581 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 388 - -
Vvi18g1744 581 CDD WD40 139 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1744 Vvi-Chr18 23531601 23547587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1744 333 524 Miscellaneous Gene Families AT5G08390 30.208 8.55e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1744 K17302 - vvi:100256305 599.742