Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1743 ATGGAATCTGAATTTATAGCACTAGATAAATGTGGGGAAGAAGTTGAATGGTTACGCCACTTCCTAGAGGATATTCCAAGGTGGTCAAAGCCTGTGCCTTCAATTTGCATACATTGTGATAGTCAATCTGATTCTAGCAAGTTTGTATTCAGGAACTGTGTGCATCTGGAACTACCTCTCGCAGTTCGGTCAGCAAAGTTTATAGCATGCAAACAATGGGTTGTTACTGGGGCTGATGACAAGTTTATCCGAGTCTTCGACTACAATACAACGGAGAAGATTGCAGAATTTGAGGCTCATACTGATTTCATTAGGAGTGTTGCAGTCCATCCTACCCTTCCATATGTGCTGTCAGCTTCTGATGACATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGAGTGTACTCAAACGTTCCAGGGACATGCCCACTATGTGATGCAAGTGGCATTTAGTCCCAAAGACGCAAACACTTTTGCAAGTGCTTCTCTTGATGGCACCATAAAGATTTGGAATCTCAGCTCACCTGCGCCAGACTTTACACTGGATGGGCATTCAAAAGGAGTGAATTGCATTGATTACTTCATGAGAGGCTCGAAACCATATCTGATCTCGGGTTCGGATGACCACACTGCTAAGGTGTGGGATTATGAAGCCAAGAGTTGTGTACAAACACTGGAAGGCCACACAAATAATGTTTCTGCAGTGTGTGTTCACCCTGAACTTCCCCTCATCATTACAGGTTCTGAGGATGGAAATGTTCACATATGGGATGGAGCTACTTACAGGCTGGAGAACACCCTGAACTATGGTTTTGAAAGAGTTTGGGCTCTTGGGTGCATGAAAGGCTCAAACAGGGTTGTGATTGGCTATGACAAAGGAACCATTATGGTAAAAGTTCTCCGTTCTCAGAGTGGGGGTTTCATGGGCATCCAGGTTGAGGAGGATGAGAAGAAGGAATGTTGA 969 0.4458 MESEFIALDKCGEEVEWLRHFLEDIPRWSKPVPSICIHCDSQSDSSKFVFRNCVHLELPLAVRSAKFIACKQWVVTGADDKFIRVFDYNTTEKIAEFEAHTDFIRSVAVHPTLPYVLSASDDMLIKLWDWEKGWECTQTFQGHAHYVMQVAFSPKDANTFASASLDGTIKIWNLSSPAPDFTLDGHSKGVNCIDYFMRGSKPYLISGSDDHTAKVWDYEAKSCVQTLEGHTNNVSAVCVHPELPLIITGSEDGNVHIWDGATYRLENTLNYGFERVWALGCMKGSNRVVIGYDKGTIMVKVLRSQSGGFMGIQVEEDEKKEC* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1743 322 CDD WD40 48 299 - -
Vvi18g1743 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 219 - -
Vvi18g1743 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 226 IPR001680 GO:0005515
Vvi18g1743 322 Gene3D - 38 302 IPR015943 GO:0005515
Vvi18g1743 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 259 IPR001680 GO:0005515
Vvi18g1743 322 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Vvi18g1743 322 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Vvi18g1743 322 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Vvi18g1743 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 176 - -
Vvi18g1743 322 SUPERFAMILY WD40 repeat-like 61 299 IPR036322 GO:0005515
Vvi18g1743 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 176 IPR001680 GO:0005515
Vvi18g1743 322 PANTHER COATOMER 55 310 - -
Vvi18g1743 322 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 129 IPR001680 GO:0005515
Vvi18g1743 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 129 - -
Vvi18g1743 322 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 259 - -
Vvi18g1743 322 Pfam WD domain, G-beta repeat 62 87 IPR001680 GO:0005515
Vvi18g1743 322 Pfam WD domain, G-beta repeat 134 173 IPR001680 GO:0005515
Vvi18g1743 322 Pfam WD domain, G-beta repeat 222 259 IPR001680 GO:0005515
Vvi18g1743 322 Pfam WD domain, G-beta repeat 93 129 IPR001680 GO:0005515
Vvi18g1743 322 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Vvi18g1743 322 FunFam Coatomer alpha subunit, putative 51 302 - -
Vvi18g1743 322 SMART WD40_4 220 259 IPR001680 GO:0005515
Vvi18g1743 322 SMART WD40_4 43 87 IPR001680 GO:0005515
Vvi18g1743 322 SMART WD40_4 90 129 IPR001680 GO:0005515
Vvi18g1743 322 SMART WD40_4 133 173 IPR001680 GO:0005515
Vvi18g1743 322 SMART WD40_4 176 217 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1743 Vvi-Chr18 23527370 23530994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1743 186 269 Miscellaneous Gene Families AT5G08390 26.190 2.26e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1743 K17302 - vvi:100256305 528.094