Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1740 ATGTCTTGGTGTTTGAGTTCTTCGACTGGACAAAAAATATCTCTGCTTTCTCACAAACTCTTGAAACTCAGAGCATTCTCTCATCTGGGTTTTTCTGAATACGTAAAAGAACGATTGGGTGTTGATGATGCTAAGAGCAGAGCTTGGAATACTACTCAAACATCTGGTTCAGATGTGGAGAGCAGCATCTATACAATTCTGACAATTGACCGTTGGGAGTCTCTGAATCACATGGCATATGGGTTGAAGCAACTTAGGCCAGTTCATGGAAGACTAGCTTTGAAATTTCTCAAGTGGGTCATCAAACAACCTGGTTTGGAACTCAAACACCTCACCCATATGTATTGTCTCACTGCCCATATACTTGTTAAAGCTAGAATGTATGACTCTGCCAAATCAATTTTGAGACATTTATGCCAAATGGGTATTGGCTCAAAATCCATTTTTGGTGCCCTCATGGACACATACCCGCTTTGCAATTCAATTCCTTCAGTTTTTGACCTTCTAATTCGGGTTTATTTAAAAGAGGGTATGATTGATTATGCCGTGGAGACATTTGAATTGGTGGGTCTTGTGGGATTTAAGCCTTCGGTATATACTTGTAACATGATCCTAGCTTCAATGGTGAAGGACAAGAGGACAGAATTGGTTTGGTCATTGTTTAGGGAAATGTCGGATAAGGGAATTTGCCCAAACGTTGGTACTTTTAATATACTGATAAATGGTTTATGTGTTGAAGGGAATCTTAAGAAAGCTGGCAATCTCTTGAAACAGATGGAAGAGAATGGTTTCGTTCCCACCATAGTTACTTATAATACTTTGCTCAATTGGTATTGCAAGAAGGGAAGGTATAAAGCGGCTATTGAGTTGATTGATTATATGATTTGTAAAGGTATTGAAGCTGATGTCTGTACGTATAATGTGTTTATCGATAATTTGTGTACAAACCACAGGAGTGCAAAAGCTTATTTATTGTTGAAAAAGATGAGGAAGGAGATGATATCCCCAAATGAAGTCACATATAATACTCTTATTAATGGGTTTGTTAAAGAGGGAAAGATTGGAGTTGCTGCTCAAGTTTTTAATGAGATGTCAAAGTTTGATCTTTCACCAAACTGTGTTACTTATAATGCTTTGATTGGTGGCCATTGTCATGTGGGTGATTTTGAGGAAGCTCTGAGGCTTTTAGATCATATGGAAGCAGCTGGACTCAGACTTAATGAAGTTACCTATGGGACTCTTTTGAATGGGTTATGCAAACATGAAAAGTTTGAGTTGGCAAAAAGACTTCTGGAGAGGATGAGGGTGAATGATATGGTTGTTGGTCATATTGCTTATACAGTGTTGATTGATGGGCTATGCAAAAATGGGATGCTTGATGAAGCTGTACAGTTGGTGGGTAACATGTACAAGGATGGAGTAAATCCTGATGTTATCACATATTCATCACTCATAAATGGATTTTGCAGAGTGGGAAACATAAAGAGTGCTAAAGAGATAATTTGTAGGATGTATAGATCTGGGCTTGTACTGAACAAGATCATATACTCAACCTTAATTTACAATTTTTGCCAGCATGGAAATGTTACAGAAGCAATGAAAGTTTATGCTGTCATGAACTGCAATGGCCATGGTGCTGACCATTTCACGTGTAATGTGTTGGTTTCTTCTCTCTGTAGAGATGGAAAGTTAGGGGAGGCAGAAAAATTTCTTTGTCATATGAGTAGGATTGGCCTAGTTCCTAACTCCATCACTTATGACTGTATTATAAATGGCTATGGCAGTATTGGGGATCCTTTAAATGCTTTTTCCTTCTTTGATGACATGATCAAATGTGGTCAGCATCCAAGTTTTTTCACATATGGAAGTCTACTAAAAGGATTATGCAAGGGGGGAAATTTGGTGGAAGCAAAAAAGTTCTTGAATAGACTACATTACATTCCTGGTGCTGTAGACTCTGTTATGTACAATACATTACTAGCTGAGACATGTAAATCAGGCAATTTGCATGAGGCAGTGGCCCTCTTTGATAAGATGGTCCAGAATAATGTGCTGCCTGATAGCTACACATACTCTAGTCTTTTGACTGGGTTATGTAGGAAGGGCAAGGCAGTTACTGCAGTTTGTCTATTTGGAACAGCCATGGGAAGGGGAACCTTGTTTCCTAACCATGTTATGTACACATGTTTGGTTGACGGTCTTTCCAAGGCAGGCCATCCAAAGGCTGCTTTCTATTTCTTTGAAGAGATGATGAAGAAAGGTACATGCCCTGATACAGTTGCATTCAATGCAATTATAGACAGTTGCTCAAGAAGAGGTCAAATGATGAAGGCAAATGATTTTTTCTCCACAATGAGGTGGTGGGGTGTGTGTCCTAATCTGGCTACTTATAATATTCTTTTGCACGGGTTTTCAAAAAAACAGGCTTTGTTAAGGTACTTATCATTATACAGTACCATGATGAGGGAGGGTATTTTCCCTGATAAGTTGACATTCCATTCTCTCATTCTTGGACTTTCAAAGTCAGGTATACCGGACCTTGGGGTTAAGCTTTTGGGAAAGATGATAATGGAAGGTACTTTAGCTGATCAGTTTACATTTAATATACTTATCAATAAGTATAGTGAGAGTGGAAAGATGAGAAAGGCCTTTGATCTGGTCAATTTTATGAATACCTTGGGGGTTTTTCCTGATCGAGATACCTACAACCATATTTTTAATGGACTCAATAAAAAATCTGCTTTCCGAGAATCTACTGTGGTTTTACATGAAATGTTGGAAAATGGTGTTATTCCAAAACATGCCCAATATATTACTTTGATTAATGGCATGTGTAGAGTTGGAGATATACAAGGAGCATTCAAGCTAAAAGATGAGATGGAGGCACTTGGTTTTGGCTCCCATGAAGTAGCTGAGAGTGCTATGGTTAGAGGGCTTCTGCACTGTGGAAAGACTGAAGATGCAATGCTTGTTTTGGATCATATGCTTAGGATGCGACTTCTTCCCACTATTGCCACATTCACAACTCTAATGCATAGATTCTGTAGAGATGCTAAGATTGCAGAGGCTTTAAAGTTGAAGGGTGTAATGGAGCTTTGTGGTCTGAAGCTTGATGTTGTTGCTTACAATGTTCTCATTATGGGCATGTGTGCTAATGGGGATTCTGCAGCTGCATTTGAGCTATATGAGGAAATGAGACATAGGGATCTTTGTCCGAATATTACCACCTATGCTGTTCTTGTTGATGCCATTTCCGCTGCAAATAATCTTATTCAGGGTGAAAAGCTTTTGACTGATCTACAGGAGCGGGGATTGATATCTTGGGGTGGTAGCACCCAACATTTGGACAAGGAATTGACAGTTGCCATGGGAAAATTAAATTATATAAGGTTCAAAAGAAGAAATAGTGTCAATAACAAGACAAATTAG 3429 0.3882 MSWCLSSSTGQKISLLSHKLLKLRAFSHLGFSEYVKERLGVDDAKSRAWNTTQTSGSDVESSIYTILTIDRWESLNHMAYGLKQLRPVHGRLALKFLKWVIKQPGLELKHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGIGSKSIFGALMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLISWGGSTQHLDKELTVAMGKLNYIRFKRRNSVNNKTN* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 304 338 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 339 373 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 584 617 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 549 582 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 760 793 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 445 478 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 654 687 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 725 759 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 235 267 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 619 644 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 515 545 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 374 407 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 1040 1074 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 937 965 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 269 303 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 865 898 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 479 512 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 409 440 IPR002885 -
Vvi18g1740 1142 NCBIfam pentatricopeptide repeat 199 233 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 933 967 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 915 1127 IPR011990 GO:0005515
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 722 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 863 897 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 898 932 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 652 686 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 758 792 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Vvi18g1740 1142 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 331 587 - -
Vvi18g1740 1142 Pfam PPR repeat 333 365 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat 930 961 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat 720 750 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 757 806 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 863 910 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 371 420 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 444 490 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 581 630 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 652 700 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 1038 1083 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 266 315 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 513 560 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat family 196 244 IPR002885 -
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 811 914 IPR011990 GO:0005515
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 74 212 IPR011990 GO:0005515
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 714 810 IPR011990 GO:0005515
Vvi18g1740 1142 SUPERFAMILY HCP-like 241 683 - -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1003 1037 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 723 757 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 968 1002 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1038 1072 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 213 329 IPR011990 GO:0005515
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 330 440 IPR011990 GO:0005515
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 793 827 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Vvi18g1740 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 575 647 IPR011990 GO:0005515
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 504 574 IPR011990 GO:0005515
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 649 713 IPR011990 GO:0005515
Vvi18g1740 1142 Gene3D Tetratricopeptide repeat domain 441 503 IPR011990 GO:0005515
Vvi18g1740 1142 Pfam PPR repeat 831 859 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat 1006 1034 IPR002885 -
Vvi18g1740 1142 Pfam PPR repeat 973 998 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1740 Vvi-Chr18 23461970 23465483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1740 353 864 Glycosyltransferase AT1G05670 29.492 1.71e-71 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1740 - K17964 vvi:104882717 2306.56