Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1735 ATGGGATCTTTGAGCTTCGATGGTGGCGGCGGGGGCGGCGGCGGTGGTGGAGCTGAGGCTCAGCCGCCGGGATCGGTGTATAGGAGTCCTGAGGTTTTCGAGAAGTTGTGGGCTTTTATGGAGGGTGAGAGCAATAGAAGCCACAATGCGCTGATGACTGTGTGGCATCCAAAACCACATCAAAGTTGGAAGCCTTGTGTCAACCAGAGAATTTCTGCAGCAGAGTTACCAAAGTCTAATGGTTACTTTATTATTGAAGCAAATGGTGGGTTGAACCAACAGCGCTTATCGATATGTGATGCAGTGGCAGTGGCAGGATTATTGAATGCTACTCTTGTAATTCCAATGTTTCATTTAAATAGTGTTTGGCGAGACTCCAGATCTGAAATTCCAAACCTTGGTGGCAATGATTCCTCTCCTATTCTCATCACAGGACACAAATTAAATGGCCATAACTATTTACAGTGGTCACAATCTGTGTTGCTGTTCATTTGCGGTAAAGGAAAGGATGAGTACCTCACTGGAGAAGCAGTCATGCCAGAAACTACAGAACCGGGTTTCAGGAAGTGGAAGATTGAAAACAGCATGATCATGTCATGGCTTATCAATTCCATGAATAATGACATAGGCGAAAATTTCTTGCTGTTTGGGACTGCAAAGGACATATGGGATGCAGCCAAAGAAACTTACTCAAGTTCTGAAAATACTTCAGAACTGTTTCAGGTTGAATCAGCTCTACATGACTTCCGCCAAGGAGAGCAGTCAGTTACTCAGTATTACAACACACTCACAAGGTATTGGCAGCAACTTGACTTATTTGAGACTCACTCATGGAAATGTTCGGATGATGCAGCAACATACAGGCAAATTGTGGAACAAAAGAGACTGTTCAAGTTCTTCCTAGGACTAAACAGGGAATTGGATGATGTTAGAGGCCGAATCATGGGCATTAAACCCCTGCCAAGTCTCAGGGAGGCTTTTTCAGAGGTTAGACGTGAAGAAAGTAGAAAGAAAGTGATGATGGGATCAAAAGACAAATTTGGGGACATATTTGATGAAGAATTCTTCATATACACTCTCCGAAACAATGTGAATGTGATCAGAGAGCTCCCAGGAGATGTCCTTCAGCGTTTTGACAATAATATAAGCAACATTGTAAATTTGAGACTAAAAGCTTGGTCAAGTCCAACCTACTATATTCAAAAGGTCCTTCCGAAGCTCCTGCAGAAGGGGGCTGTACGTGTTGCACCTTTCTCCAACAGATTGGCTCATGCAGTTCCTTCTGATAGCCAGAGCCTGAGATGCTTGGCCAACTTTGAAGCACTGAGATTTTCAGATCCTATACGAATGCTTGCAGAGAACATGGTTGATCGGATGATTAAGAATAGCTCAGAAAGTGGGGGGAAATATATTTCAGTGCATCTTCGGTTTGAAGAGGATATGGTTGCATTTTCCTGCTGTATGTATGATGGCGGTGAGGAAGAGAAACATGAAATGGATATTGCTCGTGAAAGAGGTTGGAGAGGAAAATTCAATAAAAGAGGTAGAATAATAAGGCCAGGTGCAATTCGGATGGATGGAAAATGCCCATTAACTCCATTAGAGGTAGGGATGATGCTTAGGGGCATGGGTTTTGATAATACTACCTCAGTTTATGTTGCAGCTGGAAAAATTTATAAAGCAGAAAGGTATATGGCCCCACTTAGACAGATGTTTCCACGATTAGAAACGAAGGATACACTGGCTTCTCCTGAGGAACTTGCTCCATTTAAGGGCCACTCCTCTAGGTTGGCTGCTCTTGATTATACAGTTTGCCTTCACAGTGAAGTATTTGTAACTACTCAAGGTGGAAATTTCCCCCACTTCTTGATGGGTCATAGGCGATACCTATATGGAGGCCATGCAAAGACAATAAAACCTGATAAAAGGAAATTAGCATTATTATTTGATAGCCCTGATATCAGTTGGGACAACTTTAAGAGCCAGATGCAAGACATGCTACGCCATAGTGATTCCAAGGGAAGTGAATTGCGAAAGCCCAGCAGCTCGCTTTATACCTTTCCAATGCCAGATTGCATGTGTAAACAAGCAGAAACAGGAATTGATAATGGTAACACAACAAAACTTGATTGA 2133 0.4285 MGSLSFDGGGGGGGGGGAEAQPPGSVYRSPEVFEKLWAFMEGESNRSHNALMTVWHPKPHQSWKPCVNQRISAAELPKSNGYFIIEANGGLNQQRLSICDAVAVAGLLNATLVIPMFHLNSVWRDSRSEIPNLGGNDSSPILITGHKLNGHNYLQWSQSVLLFICGKGKDEYLTGEAVMPETTEPGFRKWKIENSMIMSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVTQYYNTLTRYWQQLDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMGIKPLPSLREAFSEVRREESRKKVMMGSKDKFGDIFDEEFFIYTLRNNVNVIRELPGDVLQRFDNNISNIVNLRLKAWSSPTYYIQKVLPKLLQKGAVRVAPFSNRLAHAVPSDSQSLRCLANFEALRFSDPIRMLAENMVDRMIKNSSESGGKYISVHLRFEEDMVAFSCCMYDGGEEEKHEMDIARERGWRGKFNKRGRIIRPGAIRMDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAERYMAPLRQMFPRLETKDTLASPEELAPFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHAKTIKPDKRKLALLFDSPDISWDNFKSQMQDMLRHSDSKGSELRKPSSSLYTFPMPDCMCKQAETGIDNGNTTKLD* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1735 710 Pfam Retrotransposon gag protein 199 304 IPR005162 -
Vvi18g1735 710 MobiDBLite consensus disorder prediction 1 25 - -
Vvi18g1735 710 CDD O-FucT_plant 346 634 IPR024709 -
Vvi18g1735 710 PANTHER O-FUCOSYLTRANSFERASE FAMILY PROTEIN 20 699 IPR024709 -
Vvi18g1735 710 Pfam GDP-fucose protein O-fucosyltransferase 344 630 IPR019378 -
Vvi18g1735 710 Pfam GDP-fucose protein O-fucosyltransferase 82 127 IPR019378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1735 Vvi-Chr18 23364590 23401998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1735 346 696 Miscellaneous Gene Families AT1G22460 36.486 4.37e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1735 - - vvi:100249307 747.658