Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1734 ATGGCCAGATTTCAAACCCACAATTTTCTAAACAAGAATCGCAAATGGGACTCTCTCATTCGAGGCCTCTGTGTGAAGCTCAAAGACCCTGAAAAGGCGCTGCTAATATTGCAAGATTGCTTGACAAATCTCGGTATACTCCCTTCTTCCTTCACTTTTCATTCACTCATTCACAGTTTCACCTCTCAGGGGAAGATGAGTAGAGCAATTGAGGTGTTGGAGTTGATGACACATGACAAAGTCAGGTACCCATTTGGGAATTTTGTTTCTAGTTCTGTAATTTCTGGGTTTTGTAAGATTTCTAAGCCACAACTGGCTGTAGGGTTCTTTGAGAATGCCGTGAATTCGCGGGTTTTGCGGCCGAATATCGCAACTTGTACTGCACTACTGGGTGCTCTTTTTCAGTTGGGGAGAGTTAGGGAGGTTTCTGATTTGGTATCTTGGATGGAGAGGGAAGAATTCGTGTTTGATGTTGTGTTTTATAGTAGTTGGATTTGTGGGTACTTTAGGGAAGGGGTTTTAGTGGAGGCCATACGGAAACATAAAGAAATGATCGAAAAAGGAATAGCCCCGGATACTGTAAGCTATACTATACTCATAGATGGGTTTTCTAGGGAAGGGTATGTGGAGAAGGCAATTGGGTTTTTAGAAAAGATGAAGAAAGATGGGTTGAAGCCCAATTTGGTGACTTATACAGCCATAATGCTGGGGTTTTGCAAGAAAGGGAAATTAGATGAAGCGTATACCTTGTTCAAGATGGTGGAAAATTTAGGGATTGAAGTGGATGAATTTATGTATGTGACTTTGATTGATGGGTTTTGTACAAGGGGGGATATAGATTGTGTTTTTGGTCTGCTCGAGGATATGGAGAAGAGGGGGATTAGTCCAAGCATTGTTACATACAATTCTATTATTAATGGACTGTGTAAAGCAGGAAGAACGTCTGAGGCTGATGAGGTCTCGAAGGGTATCGCTGGAGATGCTGTTACATTCAGTACTTTGTTGCATGGATACATTGAAGAAGAGAATGTAAAGGGGATTCTGGAAACAAAAAGGAGATTGGAAGAAGATGGAGTTTGTATTGATCTTGTTATGTGTAACACAATTATCAAAGCTTTGCTTATGGTGGGGGCACTTGAAGACGCTTATGCATTTTATAAAGGAATGTCGGGAATGGATTTAGTTGCAGATTCTGTTACTTATTGTACAATGATTAATGGGTATTGTAGAGTGAGTAGAATAGAAGAGGCACTTGAGATATTTGATGAGTTTAGGAAGACATCAATTTCTTCAGTTTCATGCTACAAGTGTATGATTTATGGGCTGTGCAGGAAAGGCATGGTAGATATGGCCATTGAGGTTTTTATTGAACTCAATGAGAAAGGCTTAGAATTGGTTTCAGGCACATATACCTCATTGATTAAGGCAAGTTTTGAAGAACAAGGTGCAGAGGGAGTCCTGAAGTTTGTTCACAGAATTGAGAATTTGGGACGAGAAGCATTTGATACTATATCTAACAGTGCTATTTGTTTTTTGTGCAAGAGGGGTTTTTCCCTGGCTGCATGCGAAGTATACATGAGAATGAGAAGGAAACAATCAGTTGTTACAAGCAGGTCTTACTATTCGATTTTAAAAGGACTTATTAGTGATGATCAAAAGGGACTAGGTTGGCCTTTCTTGAACACCTTTCTGAAAGAATATGGCATAGATGAACCTAGGGTGAGCAAAGTACTGGTACCTTACATGTGCATGAAGGATGCTGATAAAGCCCTTTTCTTTCTTACTAATATACAAGTGAACACTTCAGCTGTTGCTTTTCCTGTTTCTGTACTCAAGTCACTTAAAAAAAATGGTAGAATTCTGGATGCATATAAACTTGTCATTGGTGCTGAAGAGAACTTACCTGTTATGGATTTAGTTGATTACTCAATTATGATTGATGTCCTTTGCAAGGAAGGGCATCTTGATAAGGCCTTAGATCTCTGCGCTTTTGTCAAAAAGAAGGGCATTGCTCTTAATATTTATGCTTATAATTCAGTTATAAATGGGTTGTGCCGCCAAGGTTGTCTTGTTCAAGCATTTAGACTATTTGATTCATTAGAGAAAATTGATTTGGTTCCATCTGAAATTACTTATGCTACATTGATTGATAGTTTATGTAAAGAAGGGTGTTTGCTGGATGCAAAGCAGTTGTTTGAGAAGATGGTCATTAAGGGCTTTAACCCAAATGTACGTGTTTACAACTCATTGATTGATGGCTATTGCAAGTTTGGTAACATGGAGGAAGCCTTAAACCTTCTTATTGATTTAAAGGCAAGATGCATTAAGCCTGATGAGTTCACAGTAAGTGCCTTGATTAATGGCTATTGCCATAAAGGTGACATGGAAGGGGCTCTTGGATTCTTTTTTGAGTTCAAAAAGAAAGATATTTTACCTGACTTCTTGGGTTTCATGTATTTAGTAAGAGGTCTATGTGCTAAGGGCAGGATGGAAGAGGCCCGGGGCATCTTGAGAGAGATGCTTCAAACACGCTCTGTTTTGGAGCTGATAAACAGAGTTGACACTGAGATTGAAACAGAGTCAGTAGAAAGTTTTATTATCTCTTTATGCGAGCAAGGAAGTATCCAGGAGGCCGTGACTGTCCTTAATGAAGTTGGATCTATATTTTTCCCTATAGGGAGAAGATGTAGACCTCAAAATAGAGCAGAAAAAGAAGAAAAGATTTATGAAGGGGTGACTTTTGGTGCTGTTTCTTCGAAGCATTCGAGCTTAAATCATAAAATGGATTTGGATGTTGGACTGTCTAATGTGAAAAAAGTAGAGATGGTGGTTGATGATTATGATAATTCTGAGAAAGGATCTAGAGTACCTGACTTCGAATCCTACTATTCTCTAATTGCTTCACTCTGTTCGAGGGGGGAGCTACTGGAGGCTAATAGAAAGACAAGGCAGATGCTTTTGGATATGGATACAGGCTGTTAG 2982 0.3927 MARFQTHNFLNKNRKWDSLIRGLCVKLKDPEKALLILQDCLTNLGILPSSFTFHSLIHSFTSQGKMSRAIEVLELMTHDKVRYPFGNFVSSSVISGFCKISKPQLAVGFFENAVNSRVLRPNIATCTALLGALFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGAEGVLKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILKGLISDDQKGLGWPFLNTFLKEYGIDEPRVSKVLVPYMCMKDADKALFFLTNIQVNTSAVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEARGILREMLQTRSVLELINRVDTEIETESVESFIISLCEQGSIQEAVTVLNEVGSIFFPIGRRCRPQNRAEKEEKIYEGVTFGAVSSKHSSLNHKMDLDVGLSNVKKVEMVVDDYDNSEKGSRVPDFESYYSLIASLCSRGELLEANRKTRQMLLDMDTGC* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1734 993 Pfam PPR repeat family 191 239 IPR002885 -
Vvi18g1734 993 Pfam PPR repeat family 262 310 IPR002885 -
Vvi18g1734 993 Pfam PPR repeat family 362 410 IPR002885 -
Vvi18g1734 993 Pfam PPR repeat family 431 476 IPR002885 -
Vvi18g1734 993 Pfam PPR repeat family 673 721 IPR002885 -
Vvi18g1734 993 Pfam PPR repeat family 742 791 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Vvi18g1734 993 Pfam PPR repeat 820 841 IPR002885 -
Vvi18g1734 993 Pfam PPR repeat 159 189 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 813 847 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 743 777 IPR002885 -
Vvi18g1734 993 Pfam PPR repeat 638 661 IPR002885 -
Vvi18g1734 993 Gene3D Tetratricopeptide repeat domain 587 723 IPR011990 GO:0005515
Vvi18g1734 993 Gene3D Tetratricopeptide repeat domain 340 430 IPR011990 GO:0005515
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 746 779 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 229 263 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 265 297 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 299 320 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 399 429 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 781 813 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 434 464 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 642 673 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 161 193 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 710 744 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 675 707 IPR002885 -
Vvi18g1734 993 NCBIfam pentatricopeptide repeat 194 227 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 49 83 IPR002885 -
Vvi18g1734 993 Gene3D Tetratricopeptide repeat domain 431 555 IPR011990 GO:0005515
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Vvi18g1734 993 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 18 319 - -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 708 742 IPR002885 -
Vvi18g1734 993 Gene3D Tetratricopeptide repeat domain 143 254 IPR011990 GO:0005515
Vvi18g1734 993 Gene3D Tetratricopeptide repeat domain 255 325 IPR011990 GO:0005515
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 778 812 IPR002885 -
Vvi18g1734 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Vvi18g1734 993 Gene3D Tetratricopeptide repeat domain 12 115 IPR011990 GO:0005515
Vvi18g1734 993 Gene3D Tetratricopeptide repeat domain 724 863 IPR011990 GO:0005515
Vvi18g1734 993 Pfam Pentatricopeptide repeat domain 36 82 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1734 565 888 Glycosyltransferase AT1G05670 27.744 3.08e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1734 - K17964 vvi:100266493 1973.36