Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1732 ATGCTTTTGCTGAGAACAAAGAGATCCAACCAACCATATCAAATCCCTCAAAAGCTCACATTATTTCTCAACATTGCTTTTAAATCATCTGGCCAATCTCATCCATCTTTAGAAATCAAAAGTGAAATTGATAGAGTTACTAGAATCATTAACGACCATCCATTTCCAGATCACCCGCTCCATTCCACCCTCATTCAGCATGTTCCTAAGCATCTCCTTTCCAACACCTTTGTGGAGAATGTTCTTGGTCGCCTCTTTGCAGCCCATTCCAATGGTTTTAAAGCCTTTGAATTCTTCAAATTCTCGCTCCAACATTCTGAGTTCTGTCCAAGTTCAGATGCTTTTGAAAAGACACTCCACATTCTTACACGAATGCGCTATTTTGATAAAGCTTGGGAGTTGATGGAAGAAATTCAACAAACACACCCTTCCTTGCTCACCCTTAAATCGATGAGCATCATGCTGTCAAGGATTGCAAAATTCCAATCTTATGAAGATACCCTTGAAGCATTTGGGAGGATGGAGAAGAACGTATTCTTTGGGAGGGAGTTTGGTGCCAATGAGTTCAATGTACTCCTGCGAGCATTTTGCACGCAGAGACAAATGAAGGAGGCTCGATCTGTGTTTCACAAGATGCATTCTCGATTTTCTCCCAACACCAAAACCATGAATATCTTACTATTGGGGTTCAAGGAATCTGGTGATGTCACTGCAGTGGAACTATTCTACCATGAGATGATTCGAAGAGGTTTCAAGCCAAATTCAGTGACCTATAATATCAGAATTGATGCATACTGCAAGAAAGGTTGTTTTGGTGATGGTTTGAGGCTTCTTGAAGAGATGGAAAAGGCTAATTGCCCTCCAACATTAGAAACAATTACTACTTTGATTCATGGAGCAGGGGTAGCTCAAAACATATCAAGGGCACGAGAACTATTCAATGAGATATCTATCAGAAATTTACAGCCTGATATTGGTGTTTATAACGCTTTCATGAGTTCACTCATCAGATCAAGAGAGGTGCAGTCTGCACTTATGTTGATGGATGAGATGGAAGAAGAGGGTATTGGGCATGATAGCATGACCTATCACACCATGTTTCGTGGGTTGATGAGATCAAATGGCATTGAGGGTGTTTCTGAGCTCTATCACAAGATGATCAGGCGAAACTTTGTGCCAAAGACAAGAACAATAGTGATGCTAATGAAATGGTTCTGTCAAAATCAGCAGCTCGACTTGAGTTTAGATTTGTGGGGGTACCTGATAGATAGAGGATACTGCCCCCACGGCCATGCACTAGATCTTCTGGTAACAGGGCTATGCTCCCATGGAAAAGTGAAAGAGGCCGTAGAATGTGCAAAACAGACGTTGGAGAGAGGAAGGCCGATGAGCGAAGGGGTGTTTCGGATGCTGGAGAGGTACTTGGTAGAGGCAGGGGAGGGTGAGATGCTATGGAAGCTTGACCAGATGATAAAGAAATTACATACAGTTTTGCCTCCATCAAGAGGGCATGCCATTGGTCTTGCTACTCAAACTTGGTAA 1542 0.4241 MLLLRTKRSNQPYQIPQKLTLFLNIAFKSSGQSHPSLEIKSEIDRVTRIINDHPFPDHPLHSTLIQHVPKHLLSNTFVENVLGRLFAAHSNGFKAFEFFKFSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKSMSIMLSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQRQMKEARSVFHKMHSRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRRGFKPNSVTYNIRIDAYCKKGCFGDGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFNEISIRNLQPDIGVYNAFMSSLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRRNFVPKTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEAVECAKQTLERGRPMSEGVFRMLERYLVEAGEGEMLWKLDQMIKKLHTVLPPSRGHAIGLATQTW* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1732 513 NCBIfam pentatricopeptide repeat 189 215 IPR002885 -
Vvi18g1732 513 NCBIfam pentatricopeptide repeat 327 357 IPR002885 -
Vvi18g1732 513 NCBIfam pentatricopeptide repeat 256 289 IPR002885 -
Vvi18g1732 513 NCBIfam pentatricopeptide repeat 362 393 IPR002885 -
Vvi18g1732 513 NCBIfam pentatricopeptide repeat 222 255 IPR002885 -
Vvi18g1732 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vvi18g1732 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi18g1732 513 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 158 460 - -
Vvi18g1732 513 FunFam Pentatricopeptide repeat-containing protein At3g61360 336 503 - -
Vvi18g1732 513 Gene3D Tetratricopeptide repeat domain 274 500 IPR011990 GO:0005515
Vvi18g1732 513 Gene3D Tetratricopeptide repeat domain 94 273 IPR011990 GO:0005515
Vvi18g1732 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vvi18g1732 513 Pfam PPR repeat 189 214 IPR002885 -
Vvi18g1732 513 Pfam PPR repeat 436 455 IPR002885 -
Vvi18g1732 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vvi18g1732 513 Pfam PPR repeat family 218 267 IPR002885 -
Vvi18g1732 513 Pfam PPR repeat family 323 371 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1732 Vvi-Chr18 23339416 23340957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1732 143 468 Glycosyltransferase AT1G05670 25.000 1.10e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1732 - - vvi:100261288 1040.8