Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1725 ATGGATCAAATACCTTCTTCTCCTCTCAATTCTTCTTCTACTGAATGGCGTTATGATGTTTTCTTGAGTTTTAGAGGAGAAGATACCCGCACAGGATTTACAGACCATCTCTACGCGGCTTTAGTTGACAAAGGAATCCGTACCTTTAGAGACAGTGAAGAACTTCGACGTGGAGAAGAGATTGAAGGAGAACTTCTGAAAGCTATCCATGAATCAAGAATTTTCATCATTATTTTCTCAGAAGACTATGCTAACTCCAAGTGGTGTTTAAAAGAACTCGCGGAGATCAGTAAGTGCAAAGCAAAGGGACGAAAAGTTTTTCCAGTTTTCTACCATGTAGATCCAAGCGAAGTGCGAAATCAGTCTGGATATTATGGAGAAGCATTCGCAGCTTATGAAAACGATGCGAACCAAGACAGTGAGCGAATACAAGTATGGAGGACTGCCTTGAAGGAAGCAGGCCATATAATTGGATATCATATAGATAAAGAGTAA 495 0.402 MDQIPSSPLNSSSTEWRYDVFLSFRGEDTRTGFTDHLYAALVDKGIRTFRDSEELRRGEEIEGELLKAIHESRIFIIIFSEDYANSKWCLKELAEISKCKAKGRKVFPVFYHVDPSEVRNQSGYYGEAFAAYENDANQDSERIQVWRTALKEAGHIIGYHIDKE* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1725 164 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 159 IPR035897 -
Vvi18g1725 164 Gene3D - 10 164 IPR035897 -
Vvi18g1725 164 ProSiteProfiles TIR domain profile. 16 164 IPR000157 GO:0007165
Vvi18g1725 164 PANTHER TMV RESISTANCE PROTEIN N-LIKE 11 163 - -
Vvi18g1725 164 SMART till_3 17 156 IPR000157 GO:0007165
Vvi18g1725 164 Pfam TIR domain 18 152 IPR000157 GO:0007165
Vvi18g1725 164 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1725 Vvi-Chr18 23143283 23143777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1725 6 161 Miscellaneous Gene Families AT1G57830 41.139 7.71e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1725 - - vvi:100855105 328.561