Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1724 ATGGCTTCCTCTACCCAAAAACCCTCTTCTTCTTCTACCCCAATCCGTAAATATAACTTCGATGTGTTCTTGAGTTTTAGAGGTGAAGACACCCGCAACAATTTTACGGTTCATTTATTCAAAATTTTGGGTCGGATGGGTATTAACACTTTCAGAAACGATGAACCTCTGAGACGAGAGGAGATCCAATCAGGAATTTTGAAAACTATTGAAGAATCAAGAATTTCCATAGTTGTGTTCTCAAGAAACTATGCGCATTCCCAGTGGTGTTTGGATGAGTTAGCGAAGATCATGGAGTGCAGGAAACAAAATGAACAAATAGTCTTGCCGGTGTTCTACCACGTGGATCCTTCTGATGTGCGAAAGCAAACAGGGAGCTTCGGAAATGCATTTTCCAATTATGAAAGAGGTGTAGATGAGAAAAAGGTGCAAAGGTGGAGGGATGCCTTTACTGAAGCAGCCGATACAGATGGTTTCCGTGTGCCGGAGGATGGGGATGAGCCAACTATTATTAAGAAAATCATTAATTTCGTCAATGGCGAATTGAAACTTCCAGGTCATAACTTAATTGGAATTGATGGACGTTTGGAAGAATTGAAGTCATTGATAGGCATTGGATCTTATGATGTTCGCATGCTTGGAGTATGGGGATTAGGTGGAATTGGCAAAACCACAATTGCACGAGTTATTTATAACTCAATCTCATACCAATTCGATGGTGCTAGCTTTCTTCCAAGTGTTTGCCAGCAATCCATGCCTAATGTAAAAAAAAAACTTCTATGTGACATTACTGGATTGTCCTATGGAGGCCTGAATGTTGATGAAGGAATAAGATAA 837 0.4026 MASSTQKPSSSSTPIRKYNFDVFLSFRGEDTRNNFTVHLFKILGRMGINTFRNDEPLRREEIQSGILKTIEESRISIVVFSRNYAHSQWCLDELAKIMECRKQNEQIVLPVFYHVDPSDVRKQTGSFGNAFSNYERGVDEKKVQRWRDAFTEAADTDGFRVPEDGDEPTIIKKIINFVNGELKLPGHNLIGIDGRLEELKSLIGIGSYDVRMLGVWGLGGIGKTTIARVIYNSISYQFDGASFLPSVCQQSMPNVKKKLLCDITGLSYGGLNVDEGIR* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1724 278 ProSiteProfiles TIR domain profile. 18 182 IPR000157 GO:0007165
Vvi18g1724 278 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 158 IPR035897 -
Vvi18g1724 278 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 184 - -
Vvi18g1724 278 SMART till_3 19 156 IPR000157 GO:0007165
Vvi18g1724 278 Pfam TIR domain 19 174 IPR000157 GO:0007165
Vvi18g1724 278 Gene3D - 17 178 IPR035897 -
Vvi18g1724 278 Gene3D - 179 276 IPR027417 -
Vvi18g1724 278 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 272 IPR044974 GO:0006952
Vvi18g1724 278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 254 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1724 Vvi-Chr18 23127393 23130233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1724 9 181 Miscellaneous Gene Families AT5G45220 30.220 7.12e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1724 - - vvi:100256299 556.984