Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1707 ATGGGTAGAAAGACATGGGAAAGTATTCCTCTTGAGCATTGGCCTCTGCGTAACCGCCTAAATGTTATTCTGACTCGTCCTAGAAGTTTTGATATTGCAACTGCAGAGAATGTGGTAATATGTAGAAGCATGGCTGCTGCTTTAGAACTACTAGCTACATCTCCCTATTGTCTGTCCATTGAAAAAGTGTTTGTTATAGGAAGTGGTCAGATACTAAAGGAAGGTCTCGATGCACCTGGACGTGATGCTATCCACATTGCATAA 264 0.4205 MGRKTWESIPLEHWPLRNRLNVILTRPRSFDIATAENVVICRSMAAALELLATSPYCLSIEKVFVIGSGQILKEGLDAPGRDAIHIA* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1707 87 SUPERFAMILY Dihydrofolate reductase-like 1 86 IPR024072 -
Vvi18g1707 87 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1 87 IPR001796 GO:0004146|GO:0046654
Vvi18g1707 87 PANTHER DIHYDROFOLATE REDUCTASE 1 86 IPR012259 GO:0004146|GO:0006545|GO:0046654|GO:0050661
Vvi18g1707 87 Gene3D Dihydrofolate Reductase, subunit A 1 87 IPR024072 -
Vvi18g1707 87 Pfam Dihydrofolate reductase 1 77 IPR001796 GO:0004146|GO:0046654
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1707 Vvi-Chr18 22846712 22846975 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1707 K13998 K01586 vvi:100267529 142.895